Pseudomonas fluorescens Pf0-1: Pfl01_3796
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Entry
Pfl01_3796 CDS
T00283
Name
(GenBank) putative RNA polymerase sigma factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
pfo
Pseudomonas fluorescens Pf0-1
Pathway
pfo02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
pfo00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
Pfl01_3796
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pfo03021
]
Pfl01_3796
Transcription machinery [BR:
pfo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Pfl01_3796
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_r4
Sigma70_ECF
HTH_23
GerE
HTH_24
HTH_20
HTH_11
TnsD
HTH_38
HTH_7
Motif
Other DBs
NCBI-ProteinID:
ABA75534
LinkDB
All DBs
Position
4297800..4298390
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AA seq
196 aa
AA seq
DB search
MRSILNCTLIALSIASLATDARNEYLPSMSSLDQPLNQQVQTLYSEHHGWLQGWLQRKLG
NRCDAADLAHDTFLRLLTRQVIKPLGNEPRALLTHIAKGLVIDRWRRQDLERAYLETIAH
LPAAEVPSPETRYLILETLWRIEALLRELPEQTRETFLLSQIEGLTYAQIATRLNVSLIT
VKRHMRAAFIACLSVA
NT seq
591 nt
NT seq
+upstream
nt +downstream
nt
atgcgatcaattcttaattgcaccctaatcgcactctcgattgcatctctggcaacggac
gcccgaaacgagtatctgccctccatgtcgtccctcgatcagccgttgaatcagcaagtc
cagacgctctacagcgaacaccacgggtggctgcagggctggcttcaacgcaagttgggc
aatcgctgcgatgcggccgatctggcgcacgatacctttttgcgcctgctcacccggcag
gtgatcaagcccttgggcaacgagccccgggcgctgctgacgcacattgccaaaggtctg
gtgatcgaccgctggcggcgacaggacctggagcgcgcgtacctggaaaccatcgcgcac
ctgcccgccgccgaagtgccgtcgccggaaacccgctacctgattctcgaaaccctgtgg
cgcatcgaagcgctgctgcgcgaactgccggaacagacccgcgagaccttcctgctgtcg
cagatcgaaggcctgacctacgcgcagatcgccacgcgcctgaatgtttcgctgatcacc
gtcaaacgccacatgcgtgctgcgttcattgcctgcctgagtgtcgcctga
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