Pseudomonas fluorescens Pf0-1: Pfl01_3876
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Entry
Pfl01_3876 CDS
T00283
Symbol
topA
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
pfo
Pseudomonas fluorescens Pf0-1
Brite
KEGG Orthology (KO) [BR:
pfo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pfo03032
]
Pfl01_3876 (topA)
03400 DNA repair and recombination proteins [BR:
pfo03400
]
Pfl01_3876 (topA)
Enzymes [BR:
pfo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
Pfl01_3876 (topA)
DNA replication proteins [BR:
pfo03032
]
Prokaryotic type
DNA Topoisomerases
Pfl01_3876 (topA)
DNA repair and recombination proteins [BR:
pfo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
Pfl01_3876 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
Motif
Other DBs
NCBI-ProteinID:
ABA75613
UniProt:
Q3K9E1
LinkDB
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Position
complement(4380704..4383334)
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AA seq
876 aa
AA seq
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MGKSLVIVESPAKAKTINKYLGNQYVVKSSIGHIRDLPTSGSASASKEPAAKRGKAAAGE
APALSPKEKARKQLVSRMGVDPEHGWKAKYEILPGKEKVIEELRRLAKDADTIYLATDLD
REGEAIAWHLREAIGGDDSRYKRVVFNEITKKAIQEAFSEPGELDIDRVNAQQARRFLDR
VVGYMVSPLLWAKIARGLSAGRVQSVAVKLVVEREREIRAFNPEEYWEVHADLGTAKGST
VRFEVAREKGEAFKPLNEAQATAALEKLKSSSYSIVKREDKPTSSKPSAPFITSTLQQAA
SNRLGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSADAVAMARDYIETEFGKKYLPESPN
VYSSKEGAQEAHEAIRPSDANTTPAKLAGMERDAERLYELIWRQFLACQMLPAQYLSTTV
SVAAGDFELRAKGRILKFDGYTRVLPQITKPGDDDVLPDMAQGDVMKLIKLDPSQHFTKP
PARYSEASLVKEMEKRGIGRPSTYAAIISTIQDRGYVTLHNRRFYSEKMGDIVTERLSES
FSNLMDYGFTAGMEENLDDVAQGERDWKNVLDEFYGDFKKKLEVAENPEAGMRANQPVMT
DIPCTTCGRPMQIRTASTGVFLGCSGYSLPPKERCKATVNLVPGDEIAADDEGESESLVL
RGKHRCPICSTAMDAYLLDEKRKLHICGNNPDCAGYEIEEGSYRIKGYEGPSLECDKCGS
EMQLKTGRFGKFFGCTNPTCKNTRKLLKSGDAAPPKMDPVKMPELKCEKVNDTYILRDGA
SGLFLAASQFPKNRETRAPLVIEILPHKDEIDPKYHFLCEAPQKDPDGLPAVIRYSRKTK
EQYVQTEVDGKPTGWKAFFDGGKWTVEDKRPAKAKA
NT seq
2631 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaatcgctggtcattgtggaatccccggctaaggccaagaccatcaacaagtat
ctgggtaaccaatacgtggtgaagtcgagtatcggccatatccgagacctgcccaccagc
ggttcggctagcgccagcaaggagcctgccgccaagcgcggcaaggctgctgcgggcgaa
gcgccagcgctgtcgccgaaagagaaggcgcgcaagcagctggtctcgcgcatgggtgtc
gatcccgagcacggctggaaagccaagtacgagatcctcccaggcaaggaaaaggtcatc
gaagagctgcgccggctcgccaaggatgctgacaccatctatctcgcaaccgacttggat
cgcgagggggaagccattgcctggcacctgcgcgaagccatcggtggtgacgacagccgc
tacaagcgcgtggtgttcaacgaaatcaccaagaaggcgattcaggaagccttctcggag
ccgggcgaactcgacatcgatcgagtgaacgcgcagcaggcccgtcgtttcctcgaccgc
gttgtcggctacatggtttcgccgctgctgtgggcgaagatcgcccgtggcctgtccgcc
ggtcgcgtgcaatcggttgccgtgaagctggtggtggagcgtgagcgcgagatccgtgcg
ttcaacccggaagagtactgggaagtgcacgccgacctcggcaccgccaaaggctcgacc
gtgcgtttcgaagtcgctcgcgagaaaggcgaagcgttcaagccgctgaacgaagcgcag
gccacggccgcgctggagaagctcaagtcctccagctacagcatcgtcaagcgtgaagac
aaaccgaccagcagcaagccgtcggcaccgttcatcacctccacactgcaacaggccgcg
agcaaccgcctgggcttcggtgtgaagaaaaccatgatgatggcccagcgtctgtacgaa
gccggctacatcacctatatgcgtaccgactcgaccaacctctcggctgatgccgtagcg
atggcgcgcgattacatcgaaaccgagttcggcaagaagtacctgccggagtcgccgaac
gtttacagcagcaaggaaggcgcacaagaggctcacgaagcgattcgtccttccgacgcc
aacaccacgccagccaagctggccggcatggagcgcgacgctgagcgcctctacgagctg
atctggcgccagttcctggcttgccagatgctgccggcgcaatacctgtcgaccaccgtc
agcgtcgctgctggcgacttcgagctgcgcgccaagggccgcatcctgaagttcgacggt
tacacccgcgtgctgccgcaaatcaccaagcctggcgacgatgacgttctgccggacatg
gcgcagggcgacgtgatgaagcttataaagctcgatccgtcccagcacttcaccaagccg
ccggcccgttattcggaagccagcctggtgaaggaaatggaaaagcgcggcatcggtcgt
ccttcgacctacgcagcgatcatctcgaccattcaggatcgcggctacgtgaccctgcac
aatcgtcgtttctattcggaaaagatgggcgacatcgttaccgagcgtctgtcggaaagc
ttctcgaatctcatggactacggcttcaccgccggcatggaagagaacctcgatgacgtg
gcccaaggcgagcgcgactggaaaaacgtgctggacgagttctacggcgacttcaagaaa
aaactcgaagtggctgaaaacccagaagctggcatgcgtgccaaccagccggtgatgacc
gacattccgtgcaccacttgcggccgtccaatgcagatccgtactgcatcgaccggcgtg
ttcctcggctgctccggctacagcctgccgccgaaagagcgctgcaaggccaccgtcaac
ctggtgccgggcgatgaaatcgcggcggacgacgagggcgagtcggaatccctggtactg
cgcggcaagcatcgctgcccgatctgcagcacggcgatggacgcttacctgctcgacgag
aagcgcaagctgcacatctgcggtaacaacccggattgcgccggctacgagatcgaagag
ggcagctaccgcatcaagggctacgaaggcccgagcctggaatgcgacaagtgcggcagc
gagatgcagctcaagaccggccgtttcggcaagttcttcggttgcaccaatccgacgtgc
aagaacactcgcaaactgctgaagagcggtgacgcggcaccgccgaagatggatccggtg
aagatgcctgagctgaaatgcgaaaaggtcaacgacacctacattctgcgtgacggtgct
tccggcctgttcctggcggctagccagttcccgaaaaaccgcgagacccgtgctccgctg
gtgattgagattctgccgcacaaggatgagatcgatccgaagtatcacttcctgtgcgaa
gcgccgcagaaggatccggatggtctgccagccgtgatccgctacagccgcaagaccaag
gagcaatacgttcagaccgaagtcgacggcaagccgactggctggaaagcattctttgac
ggtggcaaatggacggttgaagacaagcgtccggcgaaagccaaggcttga
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