Pseudomonas fluorescens Pf0-1: Pfl01_5187
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Entry
Pfl01_5187 CDS
T00283
Name
(GenBank) putative RNA polymerase sigma factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
pfo
Pseudomonas fluorescens Pf0-1
Pathway
pfo02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
pfo00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
Pfl01_5187
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pfo03021
]
Pfl01_5187
Transcription machinery [BR:
pfo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Pfl01_5187
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_r4
HTH_23
HTH_24
Rv2175c_wHTH
HTH_17
Sigma70_ECF
PhyR_sigma-like
HTH_3
HTH_31
FaeA
Sigma70_r3
HTH_11
PCI
HTH_5
Motif
Other DBs
NCBI-ProteinID:
ABA76924
LinkDB
All DBs
Position
5834897..5835415
Genome browser
AA seq
172 aa
AA seq
DB search
MSSAQSPHSELVGALYRDHRGWLLAWLRRNVACPQRAEDLSQDTFVRLLGRDELLTPREP
RAFLVAIAKGLLFDYFRRAALEQAYLTELMLIPEGEQPSVEEQQLILEDLKAIDRMLDKL
STKARAAFLYNRLDGLTHAEIADKLGVSVPRVRQYLAQGIRQCYIALYGEPT
NT seq
519 nt
NT seq
+upstream
nt +downstream
nt
gtgtcttcagcccaaagccctcacagtgagctcgtcggtgcgttgtatcgcgaccaccgt
ggctggctgctggcctggctgcggcgtaacgtggcttgcccgcaacgggccgaagacctg
agccaggacactttcgtccgcctgctcggccgcgacgaactgctgacaccgcgcgaaccc
cgggcatttctggtggcgatcgccaaagggttgttgttcgactacttccgccgggcggcg
ctggaacaggcgtatctgaccgaactgatgctgatccccgagggcgagcagccctcggtc
gaagaacagcaactgatactagaagacctcaaggccatcgaccgcatgctcgacaagctg
tcgaccaaggcccgcgccgctttcctctataaccgcctcgacggcctgacccacgccgaa
atcgccgacaaactcggcgtgtcggtcccccgcgtgcgtcagtacctggcccagggcatc
cgccagtgctacatcgcgctgtacggtgagccgacatga
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