Pseudomonas fluorescens Pf0-1: Pfl01_5283
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Entry
Pfl01_5283 CDS
T00283
Symbol
rhlE
Name
(GenBank) putative ATP-dependent RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pfo
Pseudomonas fluorescens Pf0-1
Pathway
pfo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pfo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Pfl01_5283 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pfo03019
]
Pfl01_5283 (rhlE)
Enzymes [BR:
pfo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Pfl01_5283 (rhlE)
Messenger RNA biogenesis [BR:
pfo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Pfl01_5283 (rhlE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
ABA77020
UniProt:
Q3K5D4
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All DBs
Position
5944390..5946258
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AA seq
622 aa
AA seq
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MSFASLGLSEALVRAIEDAGYTEPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL
ERLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKIYARDLKFVSACIFGGVGMN
PQVQAMSRGVDVLVACPGRLLDLCGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR
LPAKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRVFRLPASHKRALL
AHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLPAVAIHGNKSQNARTKALADFKAGEV
RILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKL
LKSIERMTKQKIADGDLMGFDASTIEAEKPEVRERPDMRNPRNARGPRGDGPNGGGGGGG
RKDKGKDKGKEKPAGERGERPARQQKPREGTPAREQRQPSQPPRAAADRAPDEFLDDDID
NFGNRVDYVPKQAPTGGRNRRPGAPAQGAGSGAPRGGQSQGRQNGPRNSNGSSTGTPPGK
RSGPRNGAPRDGQGRRDENSRNRRPARDDQQRAEPAVQNPRSSGPKIMHKESKADRFPTP
EQLDQLPSRPRGEKPALLTRNR
NT seq
1869 nt
NT seq
+upstream
nt +downstream
nt
atgtcctttgcttccctcggtctctccgaggctttggtccgcgctatcgaagacgcgggc
tataccgagcctactccggtgcaacagcgggccattcccgccgtgttgcaaggtcgcgac
ctgatggttgcggcacagacaggtaccggtaaaaccggcggtttcgcccttccgatcctg
gagcggctgttccccaacggtcacccggacaaatcccagcgtcacggcccgcgccaaccg
cgcgtgctggtcttgaccccgacccgcgaactcgcggcgcaggttcacgacagtttcaag
atctacgcccgcgacctgaaattcgtcagcgcgtgcatcttcggcggcgtcggcatgaat
ccgcaggttcaggccatgtcccgtggcgttgacgtgctggtggcgtgccccggtcgtctg
ctcgacctgtgcggccagggcagtgtcgatctgtcccacgtcgaaattctcgtgctcgac
gaagccgaccgcatgctcgacatgggcttcgtccacgacgtgaagaaagtcctcgcccgt
ctgccggccaagcgccagaacctgctgttctcggcgaccttctccaaagacatcacggat
cttgccggcaaactgctgcacaacccggaacgcatcgaagtgacgccgccgaacaccacg
gtcgagcgcatcgaacaacgcgtcttccgtctgccggccagccacaagcgtgcactgctg
gcccacctgatcaccgctggcgcgtgggaacaggtgctggtgttcacccgcaccaagcac
ggcgccaaccgtctggccgagtacctggacaaacacggcctgccggctgtggcgatccac
ggcaacaagagccagaacgcccgcaccaaagccctggccgacttcaaggccggtgaagtg
cgcattctggttgccaccgacatcgcggcacgcggtctggacatcgaccagttgccacac
gtggtcaacttcgaactgccgaacgtcgatgaagactacgtccaccgcatcggccgtacc
ggccgggccggtcgttcgggcgaggcgatctcgctggtcgcaccggacgaagaaaaactg
ctgaaaagcatcgagcgcatgaccaagcagaaaatcgccgacggcgacctgatgggcttc
gatgccagtaccatcgaggccgagaagcctgaagttcgcgagcgtccggacatgcgcaac
ccgcgcaatgcccgcggcccacgcggtgacggcccgaatggcggcggcggtggcggcggt
cgtaaagacaaaggcaaagacaagggcaaggaaaaaccggccggcgaacgtggcgagcgt
ccagcccgtcaacagaagccgcgcgaaggcaccccggcccgcgaacaacgccagccaagc
cagccgccacgcgccgctgctgatcgcgctccggacgagttcctcgacgacgatatcgat
aacttcggtaaccgcgtcgactacgtgccgaagcaggctccgaccggtggtcgcaaccgt
cgtccaggcgctccggcgcaaggcgcaggttcaggcgcaccccgcggcggtcagtcgcaa
ggtcgccagaacggcccgcgtaacagcaacggttcgagcaccggcacgccgccaggcaag
cgcagcggcccacgcaacggtgcaccgcgtgacggccagggtcgtcgcgatgaaaactcg
cgcaaccgccgcccggcccgtgatgatcagcaacgcgctgaaccggccgtgcagaacccg
cgcagcagcgggccgaagatcatgcacaaggaatcgaaagccgaccgcttcccgacccct
gagcagctggatcaactgccaagccgcccacgcggtgaaaaaccggccttgctgacccgc
aatcgctga
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