Poecilia formosa (Amazon molly): 103138156
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Entry
103138156 CDS
T07984
Symbol
col18a1
Name
(RefSeq) collagen alpha-1(XVIII) chain
KO
K06823
collagen type XVIII alpha
Organism
pfor
Poecilia formosa (Amazon molly)
Brite
KEGG Orthology (KO) [BR:
pfor00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pfor04147
]
103138156 (col18a1)
00535 Proteoglycans [BR:
pfor00535
]
103138156 (col18a1)
00536 Glycosaminoglycan binding proteins [BR:
pfor00536
]
103138156 (col18a1)
Exosome [BR:
pfor04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
103138156 (col18a1)
Proteoglycans [BR:
pfor00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
103138156 (col18a1)
Glycosaminoglycan binding proteins [BR:
pfor00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
103138156 (col18a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
Laminin_G_3
DUF1554
Motif
Other DBs
NCBI-GeneID:
103138156
NCBI-ProteinID:
XP_016527090
LinkDB
All DBs
Position
Unknown
AA seq
1284 aa
AA seq
DB search
SSNISSIKLHYDRSDSRLTSCLCFPEDSGVTLLQLIGDPPPEKIPEVDGPDNSPAYLFGP
ESATGQLARAHFPNPFYRNFALIFSLKPTSDDGGIVFSITDSSQQVMHLGVKLSAVQGSE
QNIILFYSEAGTGQSKEAARFRVPSMTNAWNRFAVAVKDDKAMLYLNCDVEPQVMRMERS
AGELELESGSGVFVGQAGGEHPDKFKGAISELRVVGDPSAAARFCEEDDDSDMASGEGSG
YEETRRPKPFSEKPQQTTADESLPPIQQPPLERPAQMAQTGAVAAKGEKGDRGEKGDRGP
TGPKGDAGSGSQGRIRGLKGEPGEKGAKGSAGFGYPGSKGEPGPPGPPGPPGSPGAATQY
SVDRDGSVVSKVPGPRGPPGPAGPQGPPGEDGEPGDPGEDGKTGPQGPSGFPGTPGDAGA
KGEKGDCGEGQPGPRGPPGPPGPPGTGYRSTFEDMEASGFPDLVSVRGLPGPPGPPGPPG
PPGPPGLPSSSTSVNSGAFGPPGKNGAPGQPGLPGLPGADGFPGAPGPRGEKGDSGDLGL
PGAIGQKGSLGEPGLPGPAGEPGLAGLPGPMGPVGPPGPPGPPGPGHRVGFDDMEDSSGI
FTNGLPGVRGPEGIQGPPGLPGHPGKPGFPGIQGPKGEQGLAGRDGLPGLDGFPGPPGQK
GDRGDKGETGDAGRDGTGLPGPPGPPGPPGQIIYQPSDNGVAGLPGRAGFPGPAGPKGDR
GDPGSPGYGLKGEKGEPGLISGPDGNPLYLGGLTGTKGDRGLPGPIGPSGPQGPPGLKGE
IGMPGRPGRPGVNGYKGEKGEPGGGAGYGYPGVAGPPGPPGPPGPPGPAISLDRLNRFDE
NSRGYQVVKGEKGERGDRGSPGIPGTASNFDIYTFKNELKGDQGDPGVKGEKGEPGGGYY
DPRYGAPVGPPGPPGNPGLPGPKGESIAGPPGPPGPSGPPGVGYDGRPGPAGPPGPPGPP
GNPSFSGTYRPNYPVSVPGPPGPPGPPGSPGLSSGVTVLRSYDIMIATARQQPEGSLIYI
LDKADLYLRVRDGLRQVLLGDYRTFFGDLGNEVAEVQPPPVVVYPHAPERTSNNGAGHYS
QSSTVIRPVEPPLRQPSPPVAPAADSSESGLHLVALNAPQTGNMRGIRGADFLCFQQARA
VGLKGTFRAFLSSKLQDLYTIVRRSDRNGFPIMNLKNQVLFSSWESIFSEDSNKMRENVP
LYSFDGRDILRDSAWPEKMVWHGSSQKGHRQMDHYCETWRAGEHAVTGLASSLQSGRLLQ
QTPSSCSGSYIVLCIENAFTSPSK
NT seq
3855 nt
NT seq
+upstream
nt +downstream
nt
agtagtaatatcagcagtataaagttgcattatgaccgatcagactccagactgacttcc
tgtttgtgttttccagaagacagtggcgtgacgctgctgcagctgatcggcgatcctcct
ccagagaagatcccggaggtggatggcccggacaacagccccgcctacctgttcggccca
gagtccgccacgggccagctggcccgcgcccacttccccaaccccttctacaggaacttt
gccctcatcttcagcctgaagcccacctccgatgacggcggcatcgtcttctccatcact
gactcctcgcagcaggtcatgcaccttggcgtcaagctgtcggccgttcagggctcggag
cagaacatcattttgttctacagcgaggccggcaccgggcagtccaaagaggcggccagg
ttccgagtgccgtccatgacgaacgcctggaaccgcttcgctgttgctgtgaaggatgac
aaagccatgctgtacctgaactgtgacgtggagccgcaggtgatgcggatggagcgatcg
gcgggggagctagagctggagtcagggtctggggtgttcgtgggccaggctggaggggag
catcctgacaaatttaagggtgccatcagcgagctgcgggtggtgggagaccccagcgcc
gcagcgcggttctgcgaggaggatgatgactccgatatggcttcaggagaaggaagtggc
tacgaagaaaccagacggccaaaacctttcagtgagaaacctcaacagacgacagccgat
gagtctcttcctccaatccaacagccgccgctggagcggccagcgcagatggcacaaacg
ggtgcagtcgctgctaaaggagaaaaaggcgacagaggggagaaaggagatcggggcccg
acggggccgaagggagacgcaggctccggctcccaagggagaatccgcggactaaaggga
gaaccaggtgaaaaaggagcaaagggcagtgcaggttttggatatccgggttcaaagggt
gaaccaggccctccaggaccacctgggccccctggatctccaggagccgcaactcagtat
tcagttgaccgagacgggtcagttgtttcgaaggttcctgggccgcgcggaccgcctgga
cctgcaggtcctcaggggccaccaggagaagatggagaaccaggtgatcccggtgaagat
ggaaaaactgggcctcagggaccttcagggtttccaggaactccgggtgacgctggagct
aaaggagagaagggcgactgtggagagggccagcccggccccaggggccccccagggcct
ccaggaccaccgggtacaggatacagatctacattcgaggacatggaggcctctggattc
cccgatttggtctccgttcggggacttccaggtcccccaggtcccccaggtccccccggt
cccccgggtcctcccggtcttccctcatcaagcacgtccgtgaactctggagcttttggg
cctccgggaaaaaatggagcacctggccaacctggtctgcctggtttacctggtgctgat
ggttttccaggagctcctggccccaggggcgaaaagggggattcaggcgatcttggactc
ccaggagcaatcggacaaaagggatctctaggagaacctggtttaccgggacctgcagga
gagcctggactggctggcctgccaggacccatgggaccagttggtcctcctggacctcct
gggcctccaggaccaggtcatcgggttggatttgatgacatggaggactccagtgggatt
ttcactaatggacttcctggtgtcagaggaccagaagggatacagggacctcctggttta
cctggacacccaggtaaacctggtttcccaggaattcaaggtccaaagggtgagcagggt
ctggcaggaagagacggactaccaggcctggatggcttcccaggaccgccgggacaaaag
ggtgacagaggtgacaaaggagagacgggtgatgctggtcgagatggaaccggactccca
ggcccacctggtccacctggaccaccaggacaaataatctaccagccatctgacaacgga
gtggctggtttacctggtagagctggatttcctggtcctgctggaccgaagggggacaga
ggtgaccctggttcaccaggttatggcctgaagggtgaaaaaggggagccaggcttgata
agtggaccagatggaaatcctttgtatctgggaggcctaacaggcaccaagggagacaga
ggactgccaggacctatcggaccttctggtcctcaggggcctcctggactgaaaggtgaa
ataggaatgccaggaagacccggtcgtccaggtgtgaatggatacaagggtgaaaaagga
gagccaggagggggtgcaggttatggctacccgggagttgccggcccaccaggaccccca
ggaccacccggacctccaggcccagccatttctctggatcgccttaatcgctttgatgaa
aactcaaggggttaccaagtggtaaaaggagaaaaaggagagcgtggcgaccgtggatct
cctgggatcccaggaactgcgtcgaactttgatatctatacatttaagaatgagctgaag
ggagaccagggagatccaggagtgaagggggagaaaggagagccaggtggtggatactat
gacccacgttatggagcaccagtgggcccaccaggacctccaggaaacccaggcctacca
ggtccaaagggagagtctatagctgggcctcctgggccaccaggaccttctggaccacca
ggtgttggctacgatggccgtccaggtccagcaggaccacctggtcctccaggtcctcct
gggaatccctcattttctggaacatacagacctaattatcctgtcagcgttcctggacct
cctggtccgccaggcccacctggaagccccggcctctcctctggggtgacggtgttgagg
tcgtatgacatcatgattgcgacggcccggcagcagccggagggaagtctcatttacatc
ctggacaaagcagacctctatctgagagtgcgcgacggacttcgacaagtcctcctcgga
gattacaggaccttctttggagatctgggcaacgaggtggcagaagtgcagcccccaccg
gtggtggtgtacccccacgccccagaacggacctccaacaacggagcgggtcattactcc
cagagcagcacggttatccgacccgttgagcccccgctgcggcagcccagcccccccgtg
gcgccagctgctgactcatcagaatcaggactccacctcgtagcgctgaacgcgcctcag
accggcaacatgcgagggattcgcggggcggacttcctgtgcttccagcaggctcgcgct
gttggtctgaagggaacgttcagagccttcctgtcctccaagcttcaagacctctacacc
atcgtccgcaggtcggacaggaacggattccccatcatgaacctgaagaaccaagtgttg
ttcagcagctgggagtccatcttcagtgaggacagcaacaaaatgagggagaatgtaccg
ttatactcgtttgacggcagagatatcctcagggacagtgcatggccagagaagatggtc
tggcacggatcgagccaaaagggccaccggcaaatggatcattactgtgaaacgtggcgg
gcgggcgagcacgctgtgacgggcctggcgtcgtccctgcagagcggccgcctcctgcag
cagacgcccagcagctgctccggctcctacatcgtcctctgcatagagaacgccttcacg
tcgccctccaaataa
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