Poecilia formosa (Amazon molly): 103143605
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Entry
103143605 CDS
T07984
Name
(RefSeq) TFIIH basal transcription factor complex helicase XPB subunit-like
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
pfor
Poecilia formosa (Amazon molly)
Pathway
pfor03022
Basal transcription factors
pfor03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pfor00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
103143605
09124 Replication and repair
03420 Nucleotide excision repair
103143605
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pfor03021
]
103143605
03400 DNA repair and recombination proteins [BR:
pfor03400
]
103143605
Enzymes [BR:
pfor01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
103143605
Transcription machinery [BR:
pfor03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
103143605
DNA repair and recombination proteins [BR:
pfor03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
103143605
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Helicase_C_3
ResIII
DEAD
SNF2-rel_dom
AAA_34
AAA_22
Motif
Other DBs
NCBI-GeneID:
103143605
NCBI-ProteinID:
XP_007560267
LinkDB
All DBs
Position
Unknown
AA seq
515 aa
AA seq
DB search
MGKRDKEKKSKKRYYEEEDDEDDVTGSEPQEAVPAAAGKQVDESGTKLDEYGAKDYRSQM
QLKKDHSSRPLWVAPDGHIFLEAFSPVYKYAQDFLVAIAEPVCRPNHVHEYKLTAYSLYA
AVSVGLQTSDIVEYLQKLSKTSVPDGIVQFIKLCTVSYGKVKLVLKHNRYFVESAFPDVI
QNLLQDNLIRECRLRGADGSDPELITEVIHSKSAISKAVQDKGGASTSQQPSDGQTSSQQ
VPEDIFSYYEQMDKEEEEEEETQTVSFEIRQEMIEELQKRCIQLEYPLLAEYDFRNDTVN
PDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTAACTVRKRCLV
LGNSSVSVEQWKSQFKMWSTIDDSQICRFTSDAKDKPIGCSVAISTYSMLGHTTKRSWEA
EKVMEWMRTQEWGLMILDEVHTIPAKMFRRVLTIVQAHCKLGLTATLVREDDKIVDLNFL
IGPKLYEANWMELQNNGYIAKVQCAEVNMHDNIVR
NT seq
1548 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaaagggataaagagaagaaatccaagaaacgttattatgaggaggaagacgat
gaagatgacgtgaccggcagcgagcctcaggaagccgtgccagcggctgcaggaaagcag
gtggacgagtctgggaccaagcttgacgagtatggagccaaagactaccgctctcagatg
cagctcaagaaagaccactcttcacgcccactctgggtggctccagatggacacatcttt
ctggaagcgttctctccggtgtataagtatgctcaggatttcctagtggccatcgcagag
cctgtgtgcagacctaaccacgttcatgagtacaagctgaccgcgtactcgctgtacgca
gcggtcagcgtggggctgcagacttcagacatcgtggagtacctgcagaagctcagcaag
acgtctgtaccggacggcattgtgcagtttatcaaactttgcactgtgagctatgggaaa
gtcaagcttgtgcttaagcacaacaggtatttcgtagaaagtgctttccctgacgtcatc
cagaatctcctgcaggacaacctgatccgtgaatgtcgcctgcgaggtgccgacggttcg
gaccctgagctcattaccgaggtcatccacagcaagtcagcgatttctaaggctgtccag
gacaaaggaggtgcctccacctcacagcagcccagcgatggacaaacctcgagccagcag
gtccctgaggacatcttcagctactatgagcagatggataaagaggaagaagaggaagag
gagacccagactgtgtcttttgaaattcgccaggaaatgatagaggagctgcagaagcgg
tgcattcagctggagtaccctctcctagctgagtacgactttcgaaatgacaccgtcaac
cccgacatcaacattgacctgaagcccaccgccgtgctgcggccctaccaggagaagagc
ctgcgcaagatgtttggaaacggccgcgcacgatcgggagtgatagtgctgccctgcgga
gcgggtaagtctctggtgggcgtgaccgccgcgtgcaccgtgcgtaagcgctgcctggtg
ctgggcaactcctccgtctccgtggagcagtggaagtcccagttcaagatgtggtccacc
atcgacgactcccagatctgccgcttcacctccgatgccaaggataagcccattggctgc
tcagtggccatcagcacctactccatgttgggtcacaccaccaagcgatcctgggaggca
gagaaggtcatggagtggatgcggacgcaggaatggggacttatgatcctggatgaggtc
cacaccatccctgcaaagatgtttcgacgtgtcctgaccatcgtccaggcccattgcaaa
ctgggcctcaccgccacactggtcagggaagacgacaagattgtggatctcaacttcctt
attggccctaagctgtatgaagccaactggatggagctgcagaacaacggctatatcgcc
aaagttcagtgtgcagaggtaaacatgcatgacaatatagtccggtaa
DBGET
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