Poecilia formosa (Amazon molly): 103144048
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Entry
103144048 CDS
T07984
Name
(RefSeq) collagen alpha-1(II) chain-like isoform X1
KO
K19719
collagen type II alpha
Organism
pfor
Poecilia formosa (Amazon molly)
Pathway
pfor04510
Focal adhesion
pfor04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
pfor00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
103144048
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
103144048
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pfor00536
]
103144048
Glycosaminoglycan binding proteins [BR:
pfor00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
103144048
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Motif
Other DBs
NCBI-GeneID:
103144048
NCBI-ProteinID:
XP_007560901
Ensembl:
ENSPFOG00000010436
LinkDB
All DBs
Position
Unknown
AA seq
1418 aa
AA seq
DB search
MFSFVDSRTVLLLVASQVVLLSVVRCQQEDDQAFGAKGQKGEPGEIADVVGPRGPPGPMG
PSGEQGMRGEAGAKGDKGNPGPRGRDGEPGTPGNPGPPGPPGPPGLGGNFAAQMSQGFDE
KAGTASMGVMQGPMGPMGPRGPPGPSGAPGPQGFQGAPGETGEPGPAGPIGPRGPPGPSG
KPGSDGDPGKPGKPGERGPAGPQGARGFPGTPGLPGIKGHRGHPGLDGAKGETGAAGAKG
ETGAAGESGSNGPMGPRGLPGERGRPGASGAAGARGNDGLPGPAGPPGPVGPAGAPGFPG
SPGSKGEAGPTGARGAEGAQGPRGEAGTPGSPGPAGAGGNPGTDGIPGAKGSAGAPGIAG
APGFPGPRGPPGPQGATGPLGPKGQSGDPGLPGLKGESGPKGELGPAGPQGAPGPAGEEG
KRGARGEPGTAGPNGPPGERGAPGNRGFPGQDGLAGAKGAPGDRGVPGAAGPKGATGDPG
RTGEAGLPGARGLTGRPGDTGPQGKVGASGAPGEDGRPGPPGPLGARGQPGVMGFPGPKG
ANGEPGKPGEKGLVGRPGLRGLPGKDGETGPSGPPGPAGPAGERGEQGQPGPPGFQGLPG
PTGSPGEGGKPGDQGVPGEGGAPGAVGPRGERGFPGERGSAGPQGLQGPRGLPGTPGSDG
PKGAIGPAGALGAQGPPGLQGMPGERGAGGIPGAKGDRGDNGQKGPEGAPGKDGGRGLTG
PIGPPGPSGPNGAKGETGPTGPSGAPGVRGAPGDRGELGPPGPAGFAGPPGADGQPGAKG
ELGEPGLKGEAGASGPQGPSGAPGPVGPTGVSGPKGARGAQGAPGATGFPGAAGRVGPPG
PNGNPGAAGPAGPAGKDGPKGVRGDAGPPGRPGDAGLRGPAGPPGEKGEQGPTGEPGADG
PSGPQGLAGGRGIVGLPGQRGERGFPGLPGPSGEPGKQGASGGAGDRGPPGPVGPPGLTG
PAGEPGREGTSGSDGPPGRDGAAGVKGERGNTGPAGAPGAPGAPGAPGPVGPLGKQGDRG
EAGAQGPAGPPGLAGARGIAGPQGPRGDKGEAGESGERGQKGHRGFTGLQGLPGPPGPAG
DAGPAGPAGSSGAKGPPGPLGPAGKDGSNGQPGPIGPPGPRGRSGETGPAGPPGNPGPPG
PPGPPGPGIDISAFAGLGQTEKSPDPLRYMRADEASSSLRQHDIEVDSTIKSLNTQIENL
RSPDGTQKNPARSCSDLKLCHPEWKSGDYWVDPNLGSTADAIKVFCNMETGETCVYPSIA
KVPKKNWWTSKSKDRKHIWFGETMNGGFHFSYAQEGPAASAANVQLTFLRLLSTEASQNF
TYHCKNSIAYMDQASGNLKKALLLQGSNDVEIRAEGNSRFTYSVLEDSCKSHTGRWGKTV
FEYKTQKTSRLPIVDIAPMDIGGADQEFGVDIGAVCFL
NT seq
4257 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggactcaaggactgttctgctacttgtagcatctcaagttgtttta
ctatccgtggtcagatgtcagcaagaagacgaccaggcgtttggtgccaagggccagaag
ggagaaccaggagagattgcagatgtcgtaggacctagaggaccaccaggccccatgggc
ccctcaggtgagcaggggatgcgtggagaagctggcgcaaagggtgacaagggaaatcct
ggaccaagaggaagagatggcgaacccggcacacctggaaaccccggaccacctggacca
cccggcccaccagggctgggagggaactttgctgctcagatgtctcaaggctttgatgaa
aaggctggaactgcttcaatgggtgtgatgcaaggaccaatgggccccatgggtccccgt
ggcccccctggacctagcggagctcctgggcctcagggtttccaaggagcacctggagag
actggagagcccggtccagctggaccgattggacctcgtgggccacccgggccatctgga
aaaccaggaagtgacggtgatcctggaaaacctggcaaacccggtgagcgcggacctgca
gggcctcagggagctcgtggattccctgggacacctggacttcctggaatcaaaggacac
agaggtcacccaggtctggatggagcaaagggagagactggtgctgctggagccaagggt
gagactggtgcagctggagaaagcggcagtaatgggcctatgggccctcggggtctacct
ggtgagaggggacgtcctggagcttctggagctgcaggagcccgtggaaacgatggcttg
cctggtccagctggtcccccgggcccagttggtcctgctggagctccaggtttcccagga
tccccaggctccaagggtgaagcgggtcctacaggcgcccgtggagctgaaggagcacag
ggaccccgcggagaggccggcacgccaggatcacctggaccagctggggcggggggtaac
cccggcactgatggtattcctggggctaaaggttctgctggggctcctggaattgctggc
gcacctggcttccccggcccccgaggcccacctggacctcagggagcaactggacctctt
gggcccaaaggacaatctggagatccgggtcttccaggactgaagggtgaatctggacca
aaaggagagctgggcccggctgggcctcaaggggctcctggccctgctggagaagaaggg
aagcggggtgcgaggggagagccgggaactgctggaccaaacggacctccaggagaaaga
ggagctcctggtaaccgtggtttcccaggtcaggatggtcttgctggtgctaagggagcc
cctggtgaccgtggcgtccctggtgctgctgggcctaaaggtgccactggagaccccgga
cgtacaggcgaggctggcctcccaggagccagaggtcttactggtcgtcctggagatact
gggccgcagggcaaagttggagcttctggcgctccaggtgaggacgggcgtcccggtcca
cctggtcccctgggcgcacgcggacagccaggagtcatgggattccccggaccaaaagga
gcaaatggtgaacctggaaaaccaggagagaagggactcgttggtcgacctggtctgaga
ggactacctggaaaagatggtgagactggtccttctggacctcctggacctgctgggcct
gctggagagagaggagagcaaggacagcctggacctcctggcttccagggtctgcctggt
ccaactggttccccaggagagggtggaaaacctggagatcagggtgttcctggagagggt
ggagctcctggcgctgttggacccagaggtgagcgtggtttccctggtgagcgcggtagc
gctgggcctcagggtcttcaaggaccgcgcggacttcctgggacaccaggaagtgacgga
cccaagggagcaattggaccagctggagctcttggagctcaagggcccccgggcctgcag
ggtatgcctggagagagaggagctggaggcatcccaggagccaagggagacagaggtgat
aatggacagaaggggcctgaaggcgctcctggaaaagacggtggtagaggtttgactggt
cccattggtccccctggcccatctggacccaacggtgccaagggtgagactggaccaact
ggtccttctggtgctcctggggttcgtggtgctcctggtgaccgcggtgagcttggtcct
cctgggcctgcgggcttcgctggacctcctggtgcagatggtcagccaggtgctaaggga
gagttaggtgagcccggactgaagggagaagctggtgcttctggacctcaggggccctcc
ggagctcctggacctgtgggacctactggcgtatctggacctaagggagcacgcggtgcc
cagggagcgcctggagcaacaggtttccctggtgctgctggcagagttggacctcctggt
cccaatggtaaccctggcgctgccggtcctgctggtcccgctggtaaggacggtccgaaa
ggtgttcgcggtgacgccggtcctccaggacggccaggagacgctgggcttcgtggacca
gctggacctccaggagagaagggagagcaaggaccgacgggagagcctggagctgatggc
ccttcagggccgcagggtttggctggaggtcgtggtattgttgggctgcccggtcagcgc
ggtgagagaggtttccctgggctccccggaccttctggagagcctggtaaacagggagca
tccggtggtgctggtgaccgaggaccgcctggacccgttgggcctcctggactcactgga
cctgctggagagccaggcagagagggcacatctgggtcagatggacctcctggtagagat
ggagctgctggagtcaagggagagcgaggtaacaccggtcctgcaggcgctcccggagct
ccaggcgcccctggggctcccgggccggttgggcccctcggcaaacagggagacagagga
gaagctggcgctcaaggacctgcaggaccaccaggactggctggcgctagaggaattgct
ggaccccaaggaccacgtggagataagggggaggcgggtgagtctggagagagaggtcag
aagggtcaccgcggcttcaccggtctgcagggtcttcctggacctccaggtcctgctgga
gatgccggacctgctggacctgctggatcaagtggcgctaagggaccccctggtccactt
ggacctgctggcaaagacggatctaatggacagcctggtcccattggaccccccggacct
cgaggacgctctggagaaactggtcctgctggtcctcctgggaaccccggcccccctggt
cctcctggcccaccaggtccaggcattgacatctccgccttcgctggcctgggccagact
gagaagtctcctgatcctctcaggtacatgagggctgacgaggcctccagctccctgagg
cagcatgacatagaggtcgattccacaatcaagtccctcaacacccagattgagaacttg
cgcagccctgacggtacccagaagaacccggctcgctcttgcagtgacctaaagctgtgc
caccccgagtggaagagcggtgactattgggtggatcctaacctcggaagcacagccgac
gcaatcaaggtcttctgcaacatggagacaggagagacctgcgtctacccaagcatcgcc
aaagtaccaaagaagaactggtggaccagcaagagcaaggaccgcaaacacatctggttc
ggagagacaatgaatggcggattccacttcagctatgctcaggaaggtcctgctgccagc
gctgccaacgtccagctgaccttcttgaggcttctgtccactgaagcgtcccagaacttc
acttatcactgcaagaacagcattgcctacatggatcaggcctcaggaaacctgaagaag
gcgttgctactgcagggctccaacgacgtggagatccgcgcagagggcaacagtcgcttc
acgtacagcgtgttggaggatagctgcaagagtcacacaggccggtggggcaagactgtc
tttgagtacaaaacacagaaaacctcccgtctgccaatcgtagacattgctccaatggac
atcggaggagcagatcaagaattcggagtggatataggcgccgtctgcttcttgtaa
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integrated database retrieval system
