Poecilia formosa (Amazon molly): 103150881
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Entry
103150881 CDS
T07984
Name
(RefSeq) collagen alpha-1(III) chain-like isoform X1
KO
K06237
collagen type IV alpha
Organism
pfor
Poecilia formosa (Amazon molly)
Pathway
pfor04382
Cornified envelope formation
pfor04510
Focal adhesion
pfor04512
ECM-receptor interaction
pfor04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pfor00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
103150881
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
103150881
09142 Cell motility
04820 Cytoskeleton in muscle cells
103150881
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
103150881
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pfor04147
]
103150881
00536 Glycosaminoglycan binding proteins [BR:
pfor00536
]
103150881
Exosome [BR:
pfor04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
103150881
Glycosaminoglycan binding proteins [BR:
pfor00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
103150881
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
103150881
NCBI-ProteinID:
XP_007570716
Ensembl:
ENSPFOG00000005884
LinkDB
All DBs
Position
Unknown
AA seq
1671 aa
AA seq
DB search
MASPAAARRRIPRLLVRLLVLGALLLLTNGKLVCHCTGKSRCHCEGVKGQKGEAGHPGDP
GLPGVMGFPGSEGHLGSPGETGNPGNAGSRGMKGSRGLPGIPGFPGPPGLPGIPGHEGPM
GRPGLPGCNGTKGEAGYRGVPGPSGPPGPRGPPGPQGMKGDSVVIPYRQEIKGAAGRQGP
TGREGQSGYRGEPGEPGRIGAPGLPGRRGPAGIQGEKGQEGSSPTSPGPQGRKGDRGPPG
IPGKQGTKLYAEGTKELKGEPGEAGLKGLPGLAGEPGSPRAKGEKGDRGEPGSLGKPGKT
GLPGELGQPGDPGDFGFIGPPGVDGAAGEKGNRGPPGPPGETVFNHKLVKGQRGLPGPLG
PAGVPGIQGLIGFPGLKGESGEASNGPPGSHGPTGSDGPKGEPGPPGLVVTGPPGLTGAP
GPLGLQGEPGEPGIPNVDIVGRGLPGMKGSKGSQGPAGDTGMVGEKGQKGEVCTDCCFQP
CRPGPEGPPGAPGQNGLPGAAGSPGPAGNKGFKGAAGPPGAQGPQGFPGPPGSPGPPGEP
GLNPAPGQKGEAGARGGAGPQGEAGQDGFPGPPGPKGEMGEKGNPGRQGSKGHRGPLGPP
GARGAMGPPGPPGRNHVGRPGPTGPKGANGYMGDRGAPGPRGEKGSKGNIQNIPGDPGPK
GCRGRPGEPGREGETGLRGFPGQPGPKGQKGCDGSSQKGNRGNMGSKGDKGSRGEPGFPC
YGMKGRAGPPGPPGPIGPKGNRGFGWPGEAGKLGPPGQDACDGPPGDPGPPGQPGVQGPA
GQDGRPGPKGHHGVDGEAGSTGPPGPCVPGPPGPPGPRGLAGPIGPTGAKGPPGLKGDPG
THCSRVPGPRGPPGPPGPDGGPGPAGEVGPKGWRGNPGDPGGPGLRGDMGVPGPMGHPGN
DGPPGTCGDPGPKGQKGQDGSRGSEGPPGEPGDKGETGPKGFPTVITTTGDPGDPGLPGP
RGLTGEKGEGGPPGNRGPRGMDGKRGGPGPPGRPGDPGRDGERGPCGYTGPPGDKGHTGR
PGDPGEKGAKGTNGVPGSDGGPGNPGDKGLKGEAGFGRGGKGCKGMKGIPGPPGPPGPKG
AGGPAGVPGPPGPCGPCGPVGPKGPPGSKGSPGRAGEKGLDGPPGNCGPPGPPGSPGCQG
SPGAPGPPGPKGNQGRDGIPGPDGEKGDMGSCLPGPKGPAGERGPPGCVGDRGPPGCCGP
PGPPGPEGDPGYKGAVGPPGPPGSAGKKGGECIDGTKGYKGFPGPKGPKGPKGPPGPPGL
PGPGYKGHKGVKGELGPPGPPGPTGDPGPCGPPGPCGPPGYPGEKGCRGPIGPKGQIGME
GEKGPPGSPGPGGPPGRTGNPGPNGKDSYFSVWSEPGDPGEEGALSQVGGIGSPGFPGLR
GADGSKGSLGAPGWTGIPGRDGLRGEDGERGRIGRKGANGERGRAGAKGPPGEPGEPGSG
SPPRRNGFLFSRHSQDSAAPACPAQSTLIFRGYSLLFINGYSRAHGQDLGTVGSCLQRFS
TAPFLICEVGEECRYAERNDYSYWLSNIRSPPNQTSPEAALESKISKCSVCESEANVIAI
HSQTSAVPPCPADWQSLWTGFSFVMETGVGAEGSGQPLVSPGSCLENFQGMPFMECSGSS
GTCKYDNSLYSYWLAALDPDNMFRRPSSWILPGNNPDNISRCRVCMKTMQM
NT seq
5016 nt
NT seq
+upstream
nt +downstream
nt
atggcgtctccggcggctgcgaggcggaggatcccccgcctgctggtccggctgctggtc
ctcggcgcgctgctgctgctgaccaacggcaaactggtctgtcactgcacagggaagtcc
cgctgtcactgcgagggggtcaaaggtcaaaagggagaagcaggacacccaggagaccca
ggacttcctggagtaatgggatttcctggaagcgaaggtcacctagggtcaccaggagaa
acgggtaacccgggaaatgcaggcagtcgaggaatgaagggctctcgggggcttcctgga
ataccaggttttccaggacctccaggtctcccagggattcctgggcatgaagggccaatg
ggtcgacccggactcccaggatgcaacgggacaaaaggggaggccggctaccgaggggtt
cctggaccttcaggaccgccgggaccacgagggcccccagggccacaaggcatgaaggga
gactcggtcgtgattccctacaggcaggaaataaaaggagcagcgggacgacaagggcca
accggcagagaggggcaaagtggatatagaggagagccgggcgaaccaggacggatcggg
gcccctggacttcctggaagacgaggacctgcaggaatccaaggagaaaagggacaggaa
ggttccagtccgacgagtcccggtccgcagggcaggaagggcgatcgcggccctccgggg
atccccgggaagcaaggcaccaaactctacgctgaaggaaccaaagagctgaagggcgaa
ccgggtgaagcggggctgaagggtctccccggtcttgctggggagccggggagcccgcgg
gcgaaaggagagaagggcgacagaggagaacccggctcactgggaaaaccagggaagacg
ggattaccgggagaactgggacaaccgggcgaccccggagacttcggcttcatcggcccg
cccggtgtcgacggcgccgcgggagaaaaaggcaaccgagggcccccaggtcccccagga
gagaccgtctttaatcacaaattggtgaagggccagcgaggtctccccgggcccctggga
cctgccggggtccccgggattcaaggtctgatcgggttcccaggactgaagggcgagtca
ggcgaggcctccaatggaccgccaggttctcatggtccaactggctcagatggtcccaaa
ggggaaccaggaccgccgggcctggtggttaccggaccgccaggattgaccggagcccca
ggacctcttggacttcagggagagccaggagagcctggaataccaaacgtggacatcgta
ggacggggtcttcccggtatgaaaggttcaaaaggctctcaaggccctgcgggggacaca
gggatggttggggaaaagggtcagaaaggggaggtttgtacagactgctgttttcagcct
tgccgtcctggacctgagggaccaccaggggcgccaggtcagaacgggttgccaggtgca
gctgggtctccaggaccagcaggtaataaaggcttcaaaggagccgcaggcccacctgga
gcacaggggccccaggggttcccggggcccccgggttccccagggcctcccggcgagccg
ggcttaaaccccgcgccggggcagaagggggaggccggggccaggggcggtgcggggccc
cagggagaggcggggcaggacgggttcccaggaccgccgggtcccaaaggcgaaatggga
gagaaaggaaacccggggcgtcaagggtcaaaaggtcacaggggcccgcttggcccccct
ggtgccagaggagcgatggggccaccgggcccaccgggtcgcaaccatgtgggtcgtccg
ggaccgacggggcccaaaggagccaatggctacatgggagatcgtggagcaccaggccct
agaggagagaaaggctctaaggggaacatccagaacattccaggagatccaggaccgaaa
ggctgcagaggacggccgggggaacccggacgtgaaggtgagaccggacttcggggtttc
ccaggacagcctggtccaaaaggtcaaaagggctgtgacggttcctctcaaaagggtaac
cggggcaacatggggtcaaaaggagacaaggggtccagaggagagccagggttcccttgt
tatggcatgaaggggcgagcggggccgcccggacccccggggcccattggcccaaagggg
aacagaggctttgggtggccgggtgaggcgggtaaactgggccctccggggcaggatgcc
tgtgacggacctccaggcgatccaggaccgccgggacagccgggagttcagggacctgca
ggacaagatggccgcccggggcccaaaggtcaccatggcgttgatggggaagccggctcc
acgggtccgcctgggccctgtgtccccggacctccaggacctccaggaccgcgaggtctg
gcgggtccaattggacccacaggagcgaaggggccgccgggtctgaagggagatcctggg
acccactgctccagagtccccgggcccagagggcccccagggccaccgggacctgatgga
ggcccagggccggctggggaggtgggacccaaaggctggagagggaatccgggagaccct
gggggaccagggctaagaggagacatgggtgtcccagggccgatggggcatcccggaaat
gacggaccgcctgggacctgcggggatccgggaccaaaaggtcagaagggtcaagatggt
tcaagaggttctgagggacctccaggagagccaggggacaaaggggaaactggaccaaaa
gggttcccaacagtcattaccacaacgggggatcccggagaccctggacttccaggaccc
agaggtctcactggggaaaaaggagaaggaggccccccagggaaccgagggccaaggggc
atggatggaaaacgtggagggccggggccgccaggacgtcctggagatccaggtagagat
ggagagagaggtccttgtggttacactggaccccccggggacaagggacacactggcaga
ccaggtgatccaggtgaaaaaggtgcaaagggaaccaatggggtccctggttcagatgga
gggccagggaaccccggagataagggacttaaaggagaagccggttttggacggggaggt
aaaggctgtaaaggaatgaaggggattcctggacctccaggacctccaggtccaaaagga
gcaggaggaccagctggagtccctggccctccggggccctgcggtccttgtggacctgtg
ggacccaaagggccgcctggatccaaaggttctcctggtagagccggggagaaaggtttg
gacggccctcctgggaactgtggccctccagggcctcctggaagtccaggatgccagggg
tctcctggagcacctggtccaccaggacccaaaggaaaccagggccgggacgggatcccc
gggcctgatggagagaaaggagatatgggctcatgcctacctggacctaaggggccggca
ggagaaagaggtccccctggatgcgtgggggacaggggcccgccgggatgctgtgggcct
cctggaccccctgggcctgaaggagacccgggttacaaaggcgctgtgggccccccaggg
cctcctggtagtgctgggaagaaagggggagagtgcatcgatgggacgaagggatataaa
ggatttcctggacctaaaggaccgaaaggccctaagggtccgcccggtccgcctggtctg
ccaggccctggttacaaaggccataaaggcgttaaaggagaactgggtcccccaggacct
ccgggaccaaccggtgaccccggtccttgtggacctcctggtccttgcgggccgcctgga
tatcctggagagaaaggctgcagaggaccgattggaccaaaaggtcaaatcggtatggaa
ggggagaaaggaccgccaggtagccccggcccaggtggaccaccaggacgaaccgggaac
ccaggaccaaatgggaaggactcctatttttctgtgtggtcggaaccaggagacccaggt
gaagaaggagctctaagccaagtgggaggaatcggatccccgggtttccctggattgagg
ggagctgatggttcaaaaggctcacttggagcaccgggttggacgggaatacctgggcgt
gatggactgagaggagaggatggagagagaggacgaatcggtcggaaaggtgcgaacgga
gagcgtggcagagcgggagccaaaggtcctccaggtgagccaggtgagccaggcagcggc
tcgccgccccggaggaacggcttcctgttcagcagacacagccaggacagcgccgccccg
gcctgcccggcccagtccacgctcatattcagaggatactcgctgctcttcatcaacggc
tacagccgcgctcacggacaggacctgggaacggtcggcagctgcctgcagcgtttcagc
accgctcccttcctgatctgtgaggttggagaggaatgtcgatacgctgagaggaacgac
tattcctactggctgtccaacatcaggagcccgccaaaccagaccagcccagaggcggcg
ctggagtccaagatcagcaagtgttcggtgtgtgagtctgaagccaacgtgatcgccatc
cacagccagaccagcgccgtcccgccctgccctgcggactggcagtcgctctggaccgga
ttctcctttgtgatggagacgggtgtaggcgccgagggctcggggcagcctctggtttct
cccggatcctgcctggaaaacttccaaggaatgccgttcatggagtgcagtggcagctca
ggaacctgcaagtacgacaacagcctgtacagctactggctggctgctctggaccctgac
aacatgttcaggaggcccagcagctggatccttccagggaacaacccagacaacatcagc
cgctgcagagtctgcatgaagaccatgcagatgtga
DBGET
integrated database retrieval system
