Pseudomonas fortuita: OZ911_26070
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Entry
OZ911_26070 CDS
T10310
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
pfou Pseudomonas fortuita
Pathway
pfou03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pfou00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OZ911_26070 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pfou03019
]
OZ911_26070 (rnr)
03016 Transfer RNA biogenesis [BR:
pfou03016
]
OZ911_26070 (rnr)
Enzymes [BR:
pfou01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
OZ911_26070 (rnr)
Messenger RNA biogenesis [BR:
pfou03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
OZ911_26070 (rnr)
Transfer RNA biogenesis [BR:
pfou03016
]
Prokaryotic type
tRNA degradation factors
OZ911_26070 (rnr)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNase_II_C_S1
OB_Dis3
CSD
SRP-alpha_N
Motif
Other DBs
NCBI-ProteinID:
WAP63310
LinkDB
All DBs
Position
complement(5691989..5694574)
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AA seq
861 aa
AA seq
DB search
MADWQSLDPEAAREAEKYDNPIPSRELILQRLADRGEPAAREELAKEFGLYEEDQIEALR
RRLRAMERDGQLIYTRRGTYAPVDKLDLICGRISGHRDGFGFLIPDDGSDDLFLSPSQMR
LAFDGDRALARVSGTDRRGRREGVIVEVISRAHESVVGRYFEEGGIGYVTPDNPKIQQEV
LVTAGRNGGAKIGQFVEIKITHWPTPRFQPQGDVVEVIGNYMAPGMEIDVALRSYDIPHV
WPDDVVKEARKFRSEVEEKDKEKRVDLRHLPFVTIDGEDARDFDDAVYCEPLGKLRLFSG
GWRLYVAIADVSSYVRLGSALDVEAQQRGNSVYFPERVVPMLPEELSNGLCSLNPHVDRL
AMVCEMTMNKAGQMVDYQFYEGVIHSHARLTYNKVSSMLEHARTREGKALREEYKAVVPD
LKNLYNLYKVLLDARHTRGAIDFETQETRIIFGDERKIAEIRPTVRNEAHKLIEECMLAA
NVATAEFLQKHGVPALYRVHDGPPPERLEKLRAFLGELGLSLHKGKDPSPKDYQALLASI
AGRPDFHLIQTVMLRSLSQAVYSTENNGHFGLNYEAYTHFTSPIRRYPDLLVHRAIRSII
RSKVDTPHVKRAGAMSIPKARIYPYDENTLEQLGEQCSMTERRADEATRDVVNWLKCEYM
KDRVGETFPGVITAVTGFGLFVELTDIYVEGLVHVSALPGDYYHFDPVHHRLSGERTGRS
FRLGDSIEVKVMRVDLDERKIDFEVADKTLAAPIGRKQRGAASAADKADKPEPAPVEARA
TPKPRSRKSETSEAYFPKDAVQRNAEVRKSREMKKALMSDARTGSSSSSKSDKGGKPAGK
PTKHRKGPPKSGAPRKSKSKS
NT seq
2586 nt
NT seq
+upstream
nt +downstream
nt
atggccgattggcaatccctcgatcccgaggccgctcgcgaagcggaaaaatatgacaac
cccattcccagccgtgagctgatcctgcaacgccttgccgaccgtggcgagcccgctgcg
cgcgaggaactggcgaaagagtttggtctgtatgaagaagaccagatcgaagccctccgt
cgccgtctgcgtgccatggagcgcgacggccagcttatctatacccggcgcggcacttat
gccccggtggataagctcgacctgatctgcggccgtatctccggccaccgcgatgggttt
ggtttcctcatccccgatgatggcagcgatgacctgttcctcagcccgtcgcaaatgcgc
ctggccttcgatggcgaccgcgcactggcgcgcgtgtcgggtaccgaccgccgtgggcgc
cgtgaaggcgtgatcgtcgaggtcatttcccgtgcccacgaaagcgtggtcggccgttac
tttgaagaaggcggcatcggctacgtaaccccggacaacccgaagatccagcaagaagtg
ctggtgaccgccgggcgtaacggtggtgccaagatcggccagttcgtcgagatcaagatc
acccactggccaacgccgcgcttccagccgcaaggcgatgtggtagaagtcatcggcaac
tacatggcgccgggcatggaaatcgacgttgccttgcgtagctacgacatcccgcatgtc
tggcccgatgatgtggtcaaggaagcgcgcaagttccgctctgaagtcgaagagaaagac
aaagagaagcgtgtcgacctgcgtcatttgccattcgtcaccatcgacggtgaggacgcc
cgcgacttcgatgacgctgtctattgcgagccgctgggcaaactgcgcctgttctccggt
ggctggcgcctgtatgtggccatcgccgacgtgtccagctacgtgcgcctgggctcggcc
ctggacgtcgaggcccagcagcgcggcaactcggtgtacttccccgagcgtgtggtgccg
atgctccccgaagagctgtccaacggcctgtgctcgctgaacccgcacgtcgaccgcttg
gccatggtctgtgagatgaccatgaacaaagccggccagatggtcgactaccagttctac
gaaggtgtcatccactcccacgcccgcctgacctacaacaaggtcagcagcatgctcgag
cacgcccgcacccgtgagggcaaggcgctgcgcgaggagtacaaggcggtcgtgcctgac
ctgaagaacctgtacaacctgtacaaggtgctgttggatgcccgtcacacccggggtgcg
atcgacttcgaaacccaggaaacccgcattatcttcggcgatgagcgcaaaattgcggaa
attcgcccgaccgtgcgtaacgaagcccacaagctgatcgaggaatgcatgctggcggcc
aacgtggccaccgccgagttcctgcaaaagcacggcgtgcctgcactgtaccgcgtgcac
gacggcccgccgccggagcgcctggaaaaactgcgtgccttccttggcgagctgggcctg
agcctgcacaagggcaaggacccgtcgccaaaggattaccaggccctgctggcgagcatc
gccgggcgcccggatttccacctgatccagacagtcatgctgcgctcgctgagccaggcg
gtgtacagcaccgagaacaacggccacttcgggctgaattacgaggcgtacacccacttc
acctcgccgatccgccgttaccctgacctgctggtgcaccgcgccatccgcagcatcatc
cgttccaaggtcgataccccgcacgtcaagcgtgccggcgccatgagcattccaaaggcg
cgcatctacccatacgacgagaacaccctcgagcagcttggcgagcagtgctcgatgacc
gagcgccgggctgatgaagccacccgtgacgtggtcaactggctcaagtgcgagtacatg
aaggatcgcgtgggcgaaaccttccccggtgtgattactgcggtgaccggtttcggcctg
ttcgtcgaactgaccgacatctatgtggaaggcctggtgcacgtcagtgcgctgccgggc
gactactaccacttcgatccggtccatcaccgcctgtccggtgagcgcaccgggcgcagc
ttccgcctgggcgactcgattgaagtcaaggtcatgcgtgttgacctagacgagcgcaag
atcgacttcgaagtggctgacaagacgctggctgcgccaatcggccgcaagcagcgcggc
gccgcgtcggctgccgacaaagccgacaagcccgagccagcaccggtcgaggccagggcc
acgccgaagccgcgcagccgcaagagcgaaacctccgaggcgtatttcccgaaagacgcc
gtgcagcgtaacgccgaagtgcgcaaaagccgtgaaatgaaaaaggcgctgatgagcgat
gcccgcaccggcagctcgtccagcagcaagtcggacaaaggcggcaagcccgccggcaag
ccgaccaagcaccgtaaaggcccgccgaagtccggtgcaccacgcaagagcaagagcaag
tcatga
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