Pseudozyma flocculosa: PFL1_00560 Help Entry PFL1_00560        CDS       T03141                                  Name (RefSeq) hypothetical protein   KO K14326   regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3] Organism pfp  Pseudozyma flocculosa Pathway pfp03013   Nucleocytoplasmic transport pfp03015   mRNA surveillance pathway Brite KEGG Orthology (KO) [BR:pfp00001]  09120 Genetic Information Processing   09122 Translation    03013 Nucleocytoplasmic transport     PFL1_00560    03015 mRNA surveillance pathway     PFL1_00560  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:pfp03019]     PFL1_00560 Enzymes [BR:pfp01000]  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.2  Enzymes altering nucleic acid conformation     5.6.2.3  DNA 5'-3' helicase      PFL1_00560     5.6.2.5  RNA 5'-3' helicase      PFL1_00560 Messenger RNA biogenesis [BR:pfp03019]  Eukaryotic type   mRNA surveillance and transport factors    Surveillance factors     Surveillance complex      PFL1_00560    mRNA cycle factors     Common to processing body (P body) and stress granule      PFL1_00560 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  UPF1_Zn_bind AAA_12 AAA_11 UPF1_1B_dom AAA_30 AAA_19 ResIII SLFN-g3_helicase NPHP3_N DEAD Helicase_RecD PIF1 nSTAND3 ATPase AAA_10 AAA_22 AAA_16 SRP54 PhoH UvrD_C_2 Motif Other DBs NCBI-GeneID:  19314691 NCBI-ProteinID:  XP_007876245 LinkDB All DBs Position Unknown AA seq 1114 aa AA seqDB search MADVDPFEHLEGASNYGADASEYGFTDSASVVSGADSRLSRRNNGAKSGRTRAADQIDLD LDLDLDLAAIKDLQLDEHDLEPHRHQHTGSKAAKPRSTRATDGDEVDELFDGMLDDGEAD LLQNLPPHACAYCGIHNPSCVVKCLICNKWFCNSRGSTSGSHIVNHLVRAKHKEVCLHAE SPLGETTPECYQCGAKNVFLLGFIPAKSETVVVLLCRQPCAAMTNSKDVIWDTSQWSPLI EDRCFLTWLVKMPTEHEQMRARPITFQQINRLEEMWKENENATLEDLDKPGVDEEPDGIL LRYEDAYQYQNIFGPLVKIEADYDRKLKESQTQSDLVVRWDQGLNQKKIAWMTLPKLESG EVRLAVGDELKIRYRGEMAPPWEGVGHVIKIPNNVSDEVAIELRRADGVPEHCSHNFSAD FVWKSTSFDRMQSAMKTFAVDEQSLSGYIYHKLLGHEIESATLRTAMPKRFSAPGLPELN HSQVNAVKSVLQKPLSLIQGPPGTGKTVTSATIVYQLSKMNPGPVLVCAPSNVAVDQLTE KIHATGLKVVRLTAKSREALDSPISFLTLHEQVANNDTHVELQKLIQLKNEQGELSSSDE RKYKALTRACEKEILNTADVICCTCVGCGDPRLSKLKFRTVLIDEATQAAEPECMIPLVM GCKQVVFVGDHLQLGPVIMNKKAARAGLSQSLFERLIMLGNRPIRLQVQYRMHPCLSDFP SNMFYEGTLQNGVTAPERLRKNVDFPWPVPTLPMFFFQNLGQEEISSSGTSFLNRTEASS VEKIVTQFFKAGVVPSQVGIVTPYEGQRSYVVNHMQMHGKLKKEFYKEVEVASVDAFQGR EKDYIILSCVRSNEHQGIGFLSDPRRLNVALTRARYGLVILGNPKVLNKHPLWHYLLVHY KEKGCLVEGVLSNLQPSMIQFPRPRRPLQKPGDLMARHRLDLNDPVGGSAAGVGAGSAGA RNAAGAGATAMGPADAAFFRTHDPMSYIPSDAQSVISMGTQATYPSVHLPPFGGHSAGRN GGLGAGLNGAYASSIMSQDVDSESVAGSTAPPASITYSQSDRLRRRLSLSSMGGASDLAS LEGYKSQGSVLDSQDDDSRSTISAAISQSSFTTF NT seq 3345 nt NT seq  +upstreamnt  +downstreamnt atggccgacgtcgacccctttgagcacctcgagggcgcgtccaactacggcgcagacgcc tccgagtatggcttcaccgactctgcctccgtagtctcgggagcggactccaggctgtcc cgcaggaacaatggcgcaaagtctggcaggaccagggcggcggaccagatcgacctcgac ctggatctcgacctcgacctcgccgcaatcaaggatcttcagctcgacgagcacgaccta gaaccccaccgccaccagcataccggatccaaggcggccaagccgcggagcacccgggcg accgatggagacgaggtcgatgagctgttcgacggcatgctcgacgatggcgaggccgac ctgcttcaaaacctgccgccccacgcctgcgcctactgcggtatccacaacccgagctgc gtcgtcaagtgcctgatctgcaacaagtggttctgcaactcgcgaggttctacctcgggc tcccacatcgtcaaccacctcgtcagggccaagcacaaggaggtgtgcctgcatgccgag tcgccgctcggagagacgacgcccgagtgctaccagtgcggcgccaaaaacgtcttcctg ctcggcttcatccccgccaagagcgagacggtcgtggtgctcctctgccgccagccgtgc gccgccatgaccaactccaaggacgtcatctgggacacgtcgcagtggtcgccgctgatc gaggaccgctgcttcctcacgtggctcgtcaagatgccgaccgagcacgagcagatgcgc gcccggcccatcaccttccagcagatcaaccgcctcgaggagatgtggaaggagaacgag aacgccaccctcgaggacctcgacaagcccggcgtcgacgaggagccggacggcattctg ctgcgctacgaggacgcctaccagtaccagaacatctttggcccgctcgtcaagatcgag gccgactacgaccgcaagctcaaggagagccagacgcagtcggacctggtagtgcgctgg gaccagggtctcaaccagaaaaagattgcgtggatgacgctcccgaagctcgagagcggc gaggtgcgcctggccgtcggcgatgagctcaagatccgctaccgcggcgagatggcgccg ccgtgggagggggtgggccacgtcatcaagatccccaacaacgtgtccgacgaggtggcc atcgagctgcgccgcgccgacggcgtgcccgagcactgcagccacaacttcagcgccgac tttgtgtggaagtcgaccagcttcgaccggatgcagagcgccatgaagacgtttgccgtc gacgagcagagcctcagcggctacatctaccacaagctgctcggccacgagatcgagagc gccacgctgaggacggcgatgccgaagcggttcagcgcgcccggcctgcccgagctcaac cacagccaggtcaacgcggtcaaaagcgtcctgcagaagccgctcagcctgattcagggc ccgcccggcacgggcaagactgtcaccagcgccaccatcgtctaccagctgagcaagatg aacccgggcccggtgctggtgtgcgccccctcgaacgtcgccgtcgaccagctgacggaa aagatccacgccactggcctcaaggtggtgcgcctgacggccaagagccgcgaggcgctc gacagccccatcagcttcctcacgctgcacgagcaggtggccaacaacgacacgcacgtc gagctgcagaagctgatccagctcaagaacgagcagggcgagctcagcagcagcgacgag cgcaagtacaaggcgctgacccgcgcgtgcgaaaaggagatcctcaacacggccgacgtc atctgctgcacgtgcgtcggctgcggcgacccgcgcctgtcgaagctcaagttccgcacc gtcctcatcgacgaggccacacaggcggccgagcccgagtgcatgatcccgctcgtcatg ggctgcaagcaggttgtcttcgtcggcgaccacctccagctcggacccgtcatcatgaac aagaaggccgcgcgcgccggcctcagccagagcctcttcgaacgcctgatcatgctcggc aaccggcccatccgcctccaggtgcagtaccgcatgcacccttgcctttccgacttcccc agcaacatgttctacgagggcacgctgcagaacggcgtcacggcgcccgagcggctgcgc aagaacgtcgactttccctggcccgtgccgacgctgccgatgttcttcttccagaacctg ggccaggaggagatctcgagctccggcacctcgttcctcaaccgcaccgaggcgtcgagc gtcgaaaagatcgtcacgcagttcttcaaggccggcgtggtgccgtcgcaggtcggcatc gtcacgccgtacgagggccagcgcagctacgtcgtcaaccacatgcagatgcacggcaag ctcaagaaggagttctacaaggaggtcgaggtggccagcgtcgacgccttccagggccga gaaaaggactacatcatcctcagctgcgtcaggagcaacgagcaccagggcatcggcttc ctcagcgacccgaggcgcctcaacgtcgccctcacccgcgcccggtacggcctcgtgatt ttgggcaacccgaaagtcctcaacaagcacccgctctggcactacctgctcgtccactac aaggaaaagggctgcctggtcgagggcgtgctgtcgaacctgcagccgtcgatgatccag ttcccgcggccgcgccgtccgctgcagaagcccggcgacctgatggcgcgtcatcggctg gacctcaacgaccccgtcggtggctcagcggccggcgttggcgcgggctcggctggcgcg aggaacgcagccggagcaggggccaccgccatgggccctgccgacgcggccttcttccgc acccacgacccgatgtcgtacatcccgagcgacgcgcagagcgtcatcagcatgggtacg caggctacctacccttcggtccacctgccgccgtttggaggccactctgccggacgcaac ggtgggcttggcgccggcctcaatggcgcctatgccagcagcatcatgagccaggatgtc gattcagagagcgtggccggtagcactgcaccgcccgccagcatcacgtacagccagagc gaccggctgcgtcgtcgcctcagcctcagcagcatgggcggcgcctcggacctggctagc ctcgagggctacaagagccaagggtcggtgctggactcgcaggacgacgactcgcgctcg acgatctcggcggccatctcgcagtcctcgttcaccacgttctag

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