Pseudozyma flocculosa: PFL1_00689
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Entry
PFL1_00689 CDS
T03141
Name
(RefSeq) hypothetical protein
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
pfp
Pseudozyma flocculosa
Pathway
pfp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pfp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
PFL1_00689
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pfp03041
]
PFL1_00689
Enzymes [BR:
pfp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
PFL1_00689
Spliceosome [BR:
pfp03041
]
Complex C
Other components
Step II factors
PFL1_00689
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
S1
WHD_HA2
DEAD
AAA_22
AAA_30
ABC_tran
AAA_19
nSTAND3
PhoH
TsaE
T2SSE
Ploopntkinase3
Flavi_DEAD
SLFN-g3_helicase
nSTAND_NTPase5
AAA_16
Microtub_bd
NB-ARC
Sigma54_activ_2
ATPase
Motif
Other DBs
NCBI-GeneID:
19314819
NCBI-ProteinID:
XP_007876382
LinkDB
All DBs
Position
Unknown
AA seq
1208 aa
AA seq
DB search
MASSAGDEIYQLELLSLTSKITNELLNHTGINDRVLAEFVISLHEQSKSIDDFKAKLAEV
GAEFPLSFVTNLDRLILSMHPKHRKKAQAPASAPSSSAAAAAAANGKAKQADADAALDEE
RERKKRMFPGLAIRDQEWQAPEDKKPERGAENAVDAFMKEFEDMANRRTGAPASDGRSPG
GSGRGPRSGSRGSRSPPPARDGDRYADDRRSRRRFDDDDERDGGYTRRGRDERPPHHLTR
NAPDEKPVMYKIYDGKVSGMKDFGAFVSLEGLRGKFEGMVHIGSIAANSRVNHPSDLLSR
GQRVKVKVMSMVGGRIGLSMKDVDQATGRDLTPHLRIKSEAEMAADRERMSARPGGNSAK
RLTSPERWELKQLIASGAAKASDYPELMEEELRTPTVRGGGGGGGGIPADDDEDIDIEVN
EKEAPFLAGQTSLSLELSPVKIVKAPDGTLNRAALAGASLAKERRELRQQEINDQADGEV
RDMSSGWQDPMAQQGDRVFAQDMRGNLLGQKAQDQPAWKKETFNKATTFGRITSLSMQEQ
RQSLPIYKLRQQLVQAIRENQVLVVVGDTGSGKTTQMTQYLAEEGFADRGKIGCTQPRRV
AAVSVAKRVAEEVGCRVGQEVGYTIRFEDCTSPETRIKYMTDGMLQRECLIDPDVSQYSV
IILDEAHERTIATDVLFGLLKKALKRRPDFKLIVTSATLDAEKFSTYFLGCPIFTIPGRT
YPVEVLYTKEPEPDYLDASLITVMQIHLSEPPGDILVFLTGQEEIDTSCEILFERMRALG
PSVPELIILPVYSALPSEMQSRIFDPTPPGSRKVILATNIAETSITIDGIYYVIDPGFVK
QNAYDPRLGMDSLVVTPISQAQARQRSGRAGRTGPGKCYRLYTEAAYRNEMLPNPIPDIQ
RQNLASTILTLKAMGVNDLLNFDFMDPPPAQTLLTALESLYALSALDDEGLLTRLGRKMA
DFPMEPMMAKMLIASVDLGCSEEILSIVAMLSVQNIFYRPKEKQAQADAKKAKFFQPEGD
HLTLLTVYNGWAASKFSQPWCMDNFVQGRSLRRAQDVRKQLLGIMDRYNHDIITCGKNYN
RVRKAICSGYFRNAAKKDPQEGYKCLAEGGGTVYIHPSSSLFNRAPEYCIYHEVVLTTRE
YMREVTAIEPKWLVEVAPRFFRPADASQISRRKRQEKIAPLFDKYAKNQDEWRLSKVKRV
GRSSQTFG
NT seq
3627 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcctctgccggcgacgaaatctaccagctcgagctgctctccctcacctccaag
attacaaacgagctgctcaaccacaccggcatcaatgaccgcgtgctggccgagtttgtc
atttcgctccacgagcagtcaaagtcgatcgacgacttcaaggccaagctcgcagaggta
ggcgcagagttcccgctctcgtttgtcaccaacctcgaccgcctcatcctcagcatgcac
ccaaagcaccgcaaaaaggcccaggcgcccgcgtcagcgccgtcgtcgtcggccgccgcc
gccgccgcagccaacggcaaggccaagcaggccgacgccgacgccgccctcgacgaggag
agggagcgcaagaagcgcatgttccccggccttgccatccgcgaccaggagtggcaggcg
ccagaggacaagaaaccggagcgcggcgccgaaaacgccgtcgacgcatttatgaaggag
tttgaggacatggccaaccgccgcaccggagcgccagcgtcagacgggcgcagcccagga
ggatccggaagagggccgaggagtggcagccgcgggtcgaggtcgccgccgccggcgcgg
gacggcgaccggtacgccgacgaccgccgcagccgacgacgcttcgacgacgacgacgaa
cgcgacggaggctacacgaggcgaggccgcgacgagaggccgccgcaccacctcacgcgc
aacgcgcccgacgagaagccggtcatgtacaagatctacgacggcaaggtgagcggcatg
aaggactttggcgcgtttgtcagcctcgagggcctgcggggcaagttcgagggcatggtc
cacatcggctccattgcggccaactcgcgcgtcaaccacccgtcggacctgctgtcgcgc
ggccagcgggtcaaggtcaaggtcatgtcgatggtgggcgggcggatcggcctgtcgatg
aaggacgtcgaccaggcgacgggccgcgacctgacgccgcacctgcgcatcaagtccgag
gccgagatggcggcggaccgcgagcggatgagcgccaggccgggcggcaacagcgccaag
cggctgacgagcccggagcgctgggagctcaagcagctgatcgccagcggcgccgccaag
gcgagcgactacccggagctgatggaggaggagctgcggacgccgaccgtgcgcggcggc
ggcggcggcggcggcggcatcccggccgacgacgacgaggacatcgacatcgaggtcaac
gaaaaggaggcgccgttcctggcgggccagacgagcctgtcgctggagctgtcgccggtc
aagattgtcaaggcgcccgacggcacgctcaaccgggcggcgctggcgggcgcgtcgctg
gccaaggagcggcgggagctgcgccagcaggagatcaacgaccaggccgacggcgaggtg
cgcgacatgagctccggctggcaggatccgatggcgcagcagggcgaccgggtgtttgcg
caggacatgcggggcaacctgctgggccaaaaggcgcaggaccagccggcgtggaagaag
gagacgttcaacaaggcgacgacgtttggccggatcacgagcctgagcatgcaggagcag
cgacagagcctgcccatctacaagctgcggcagcagctggtgcaggccatccgcgagaat
caggtgctggtcgtcgtcggcgacacgggctcgggcaagacgacgcagatgacccagtac
ctggccgaggagggcttcgccgaccgcggcaagatcggctgcacccagccgcgccgcgtc
gccgccgtcagcgtggccaagcgcgtggccgaggaggtgggctgccgcgtcggccaggag
gtgggctacacgatccgcttcgaggactgcaccagccccgagacgcggatcaagtacatg
accgacggcatgctgcagcgcgagtgcctcatcgacccggacgtgtcgcagtactcggtc
atcatcctcgacgaggcccacgagcgcaccatcgccaccgacgtcctcttcggcctgctc
aaaaaggcgctcaagcggcgcccggactttaagctgatcgtcacctcggccacgctcgac
gcggaaaagttcagcacctactttctcggctgccccatcttcaccatcccgggacgcacc
tacccggtcgaggtgctctatacaaaggagcccgagcccgactacctcgacgcgtcgctc
atcaccgtcatgcagatccacctgtcggagccgccgggcgacatcctcgtcttcctcacg
ggccaggaggagatcgacacgagctgcgagatcctctttgagcggatgcgcgcgctgggc
cccagcgtgcccgagctcatcatcctgcccgtctactcggcgctgccgtccgagatgcag
tcgcgcatctttgacccgacgccgcccggctcgcgcaaggtcatcctcgccaccaacatc
gccgagacaagcatcaccatcgacggcatctactacgtcatcgacccgggctttgtcaag
cagaacgcctacgacccgcgcctcggcatggacagcctcgtcgtgacgcccatctcgcag
gcccaggcccgccagcgctccggccgcgccggccgcacgggcccgggcaagtgctaccgg
ctctacaccgaggcggcctaccgcaacgagatgctgcccaaccccatccccgacatccag
cgccagaacctcgcctcgacgatcctcacgctcaaggccatgggcgtcaacgacctgctc
aactttgactttatggacccgccgcccgcccagacgctcctgacggcgctcgagtcgctc
tacgccctgtcggccctcgacgacgagggcctgctgacgcgcctcggccgcaagatggcc
gacttccccatggagcccatgatggccaagatgctcatcgccagcgtcgacctcggctgc
agcgaagagatcctcagcatcgtcgccatgctcagcgtccagaacatcttttaccgccca
aaggagaagcaggcgcaggccgacgccaaaaaggccaagttcttccagcccgagggcgac
cacctcaccctcctcaccgtctacaacggctgggccgccagcaagttttcgcagccctgg
tgcatggacaactttgtccagggccgctccctccgccgcgcccaggacgtccgcaagcag
ctcctcggcatcatggaccgctacaaccacgacatcatcacctgcggcaaaaactacaac
cgcgtccgcaaggccatctgctcgggctactttcgcaacgccgccaaaaaggacccgcag
gagggctacaagtgcctcgcagagggcggcggcaccgtctacatccacccgtccagctcc
ctctttaaccgcgctcccgagtactgcatctaccacgaggtcgtcctcaccacgcgcgag
tacatgcgcgaggtcacggccatcgaaccaaagtggctcgtcgaggtcgcaccgcgcttc
ttccgccccgcagacgcctcgcagatctcgcgcaggaagcgccaggagaagatcgccccg
ctgtttgacaagtacgccaagaaccaggacgagtggcgtctctccaaggtcaagcgcgtc
ggccgcagcagccagacgtttggctga
DBGET
integrated database retrieval system
