Pseudozyma flocculosa: PFL1_00844
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Entry
PFL1_00844 CDS
T03141
Name
(RefSeq) hypothetical protein
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
pfp
Pseudozyma flocculosa
Pathway
pfp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pfp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PFL1_00844
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pfp03019
]
PFL1_00844
Messenger RNA biogenesis [BR:
pfp03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
PFL1_00844
mRNA degradation factors
5'-3' decay
Decapping complex
PFL1_00844
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
DUF4512
Motif
Other DBs
NCBI-GeneID:
19314973
NCBI-ProteinID:
XP_007876536
LinkDB
All DBs
Position
Unknown
AA seq
997 aa
AA seq
DB search
MSFFGFDTALPRDKPAIRPGQQPHHASSAFDPTFDPTGGIDDDDTLDAKIKALAAGAQED
VEIYTWGQEGYDGLGDKLDEANDDFNEDTFGDLGGDVGKDFDFGAAAGLDPVKPGANHQN
NNNNNVNWQAQQPQHQQHAGKRDTASAFATTLDEFWMTPPSRFGARDDRPTTSQPQQQQQ
QQQLPKQAAPRTLEEVEAEMLAMRGKVQPSQPPQQQPVEAESQGRGKPMTLEEVEAEMLA
RRGAVAPVQNASPATSVQDPNLPVGLSALMQQQQQGAFPPGMPPPPPGYSHSPQPSVGLP
GMPPMVPPPNLRMMPGQQPPTAAAMQAAQQQAQAAHFARMRALLEAMPPLVQQSILSLPP
PMQFESLESVVVAYPGLLDPSQREGAPGSAAEQEAVKFMMVKAQAHIAELERAEAKRKRR
LDKIASMARYNGLMSGSDKDFITRIQISQLITADPYADDFYAHIYFALRGGPMRPGVPAA
VVPSAGNNNGNGAGTKQGKGKQRLNKQQNAMLRMQQQVERIVQNRKERIEKSASGAALEG
ALGRVSLSSTKNPRQMLQINASEASPKAGTAATTKGRDSPGAGHARDAVKQALEGASLGR
EGANGQRRDPLGKHEVLRILENLYDTVLALEQKRRNAPPAPAGEAAGGGGGGDDGEASKA
AADPAADQAREAYEAWQAEQAALTAKLWKELRVLEPLEISDPHPFVSLLSCAKGKRLLPR
ALRHLTPEQTLTALTMVVASFETLDVVRLAPLLDDPTDDAARTEAKNDVERQTETFATTI
VPSMMQLAATAPMRIVSGMLALFVERNDAVRVAQTRPGVAFLTIFLSRAETLRQGGGAAG
GEEPSADELDQWKQIFGLLFSRLTAGGKLPTLFPSTRAKAALPFGVGYYLSGGLGGATSG
LTSQMSSGGRYRNADVEDEPVWNLMAALAVSAGMEQQQVLVQELREKILENVVSAKEWSK
RNGGANAAGDELGPDLRIRNVNLLLHALNLDAAQITV
NT seq
2994 nt
NT seq
+upstream
nt +downstream
nt
atgtccttcttcggcttcgacaccgccctgccaagggacaagcctgccatccgtccaggc
cagcagcctcaccacgccagctcggccttcgaccccacctttgaccccactggcggcatc
gacgacgatgacaccctcgacgcaaagatcaaggcactcgccgccggcgcacaggaggat
gtggaaatctacacatggggccaggagggatacgacggcctcggagacaagctcgacgag
gcaaacgacgacttcaacgaagacacctttggcgacctcggtggcgatgtcggcaaggac
tttgactttggcgccgctgccggactcgatcccgtcaagcccggcgccaatcaccagaac
aacaataacaacaacgtcaattggcaggcccagcagccgcagcaccagcagcatgccgga
aaacgcgacaccgcatccgcctttgccaccaccctggacgagttctggatgacgcctccc
tcccgtttcggcgcccgcgacgaccgcccgacgacttcgcagccccagcagcagcagcag
cagcagcagttgcccaagcaggccgctccccgtacgctcgaggaagttgaggccgaaatg
cttgcaatgaggggcaaggttcagcctagccagccgccgcagcagcagcccgtggaggcc
gagtcgcagggccgggggaagcccatgacgctcgaagaagtcgaggcagagatgctggcg
cgtcgtggcgcggttgcccccgtccagaacgcatcacccgctaccagcgtgcaagaccca
aatcttcccgtcggactttcggcactgatgcagcagcagcagcagggtgcgttccctccg
ggcatgccgccaccgccgcctggctactcgcactcgccccagccgtcggtgggtctgcct
ggcatgccgcccatggtacctccgccaaacctgcgcatgatgccaggacaacagcctccg
accgcagcggccatgcaggcagcccagcagcaggcgcaggcagcccacttcgcccgcatg
cgcgccctgctcgaggctatgcccccgctcgtccagcagagcatcctctcgctcccgcca
cccatgcagttcgaatcgctcgagagcgtcgtcgttgcctaccccggcctgttggacccc
agccagcgcgagggcgcacccggctccgccgccgagcaggaggccgtcaagttcatgatg
gttaaggcccaagcccacatcgctgagctcgagcgggccgaggccaagcgcaagaggcgg
ctcgacaagatcgcttccatggcgcgctacaacggcctcatgtcgggctcggacaaagat
ttcatcacccgaatccagatcagccagctcattaccgccgacccgtacgccgatgacttt
tacgcgcacatctactttgcgctgcgaggcgggccgatgcgaccgggcgtccccgccgct
gtggtcccctcggccggcaacaacaacggcaacggcgccggaactaagcagggcaagggc
aagcagcggctaaacaagcagcaaaacgcgatgctgcggatgcagcagcaggtggagcgg
atcgtccaaaaccgcaaggagcggatcgaaaagagcgccagcggcgccgctctcgagggc
gcgctgggccgcgtcagcctgagtagcaccaagaaccccaggcagatgctccagatcaac
gcctctgaggcgtcgcccaaggccgggaccgccgccaccaccaagggccgggatagcccg
ggcgccggccacgcgcgcgacgccgtcaagcaggcgctcgagggcgccagcctcggccgt
gagggcgccaacgggcagcggagggatccgctcggcaagcacgaggtgctgcggatccta
gagaacctctacgacacagtgctcgcgctcgaacagaagcgccgcaatgcgcctcccgct
cccgctggcgaagctgctggtggtggtggcggtggtgacgacggcgaggcatccaaagcg
gcagcggatccggcggccgaccaggcgcgtgaggcgtacgaggcgtggcaggccgagcaa
gctgcgctgacggccaagctgtggaaggagctgcgggttctggagccgctcgagatttcg
gacccgcaccccttcgtctcgctgctgtcctgtgccaagggcaagcggctgctgccgcgt
gcgttgcgccacctgacgcccgagcagactttgacggcgctgacgatggtggtagcgtcg
tttgagaccctcgacgtggtgcggctggcgcctctgctcgacgacccgaccgacgacgcg
gccaggaccgaggccaagaacgacgtcgagaggcagaccgagacatttgccacgacgatt
gtgccgagcatgatgcagctcgccgccacggcgccgatgcgcatcgtcagcggcatgctg
gcgctgttcgtcgagcgcaacgatgcggtgcgcgtggcgcagacgcggccgggcgtggca
ttcctcaccattttcctgtcgcgcgctgagacgctgcgccagggcggcggcgcggcgggc
ggcgaggagccatcggctgacgagttggaccagtggaaacagatcttcggcttgctgttt
tcccgcctgacggcgggcggtaagctgcctactcttttcccatcaacgcgcgctaaggca
gctttaccgttcggagtgggctactacctctcgggcggcctcggtggggccacatcggga
ctgacgtcgcaaatgtcttcaggaggacgataccgcaatgccgacgtcgaagacgagccc
gtctggaacctcatggccgccctggccgtctcggcgggaatggagcagcaacaggtcctg
gttcaggagctccgcgagaagattctcgaaaacgtcgtttcggccaaggagtggagcaag
cgcaacggtggtgccaacgcggctggagatgagctcggtcccgatctgaggatccgaaac
gtcaacctcctccttcatgccctcaatctcgacgctgctcagatcaccgtctag
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integrated database retrieval system