KEGG   Pseudozyma flocculosa: PFL1_00844
Entry
PFL1_00844        CDS       T03141                                 
Name
(RefSeq) hypothetical protein
  KO
K12617  DNA topoisomerase 2-associated protein PAT1
Organism
pfp  Pseudozyma flocculosa
Pathway
pfp03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pfp00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    PFL1_00844
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pfp03019]
    PFL1_00844
Messenger RNA biogenesis [BR:pfp03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     PFL1_00844
  mRNA degradation factors
   5'-3' decay
    Decapping complex
     PFL1_00844
SSDB
Motif
Pfam: PAT1 DUF4512
Other DBs
NCBI-GeneID: 19314973
NCBI-ProteinID: XP_007876536
LinkDB
Position
Unknown
AA seq 997 aa
MSFFGFDTALPRDKPAIRPGQQPHHASSAFDPTFDPTGGIDDDDTLDAKIKALAAGAQED
VEIYTWGQEGYDGLGDKLDEANDDFNEDTFGDLGGDVGKDFDFGAAAGLDPVKPGANHQN
NNNNNVNWQAQQPQHQQHAGKRDTASAFATTLDEFWMTPPSRFGARDDRPTTSQPQQQQQ
QQQLPKQAAPRTLEEVEAEMLAMRGKVQPSQPPQQQPVEAESQGRGKPMTLEEVEAEMLA
RRGAVAPVQNASPATSVQDPNLPVGLSALMQQQQQGAFPPGMPPPPPGYSHSPQPSVGLP
GMPPMVPPPNLRMMPGQQPPTAAAMQAAQQQAQAAHFARMRALLEAMPPLVQQSILSLPP
PMQFESLESVVVAYPGLLDPSQREGAPGSAAEQEAVKFMMVKAQAHIAELERAEAKRKRR
LDKIASMARYNGLMSGSDKDFITRIQISQLITADPYADDFYAHIYFALRGGPMRPGVPAA
VVPSAGNNNGNGAGTKQGKGKQRLNKQQNAMLRMQQQVERIVQNRKERIEKSASGAALEG
ALGRVSLSSTKNPRQMLQINASEASPKAGTAATTKGRDSPGAGHARDAVKQALEGASLGR
EGANGQRRDPLGKHEVLRILENLYDTVLALEQKRRNAPPAPAGEAAGGGGGGDDGEASKA
AADPAADQAREAYEAWQAEQAALTAKLWKELRVLEPLEISDPHPFVSLLSCAKGKRLLPR
ALRHLTPEQTLTALTMVVASFETLDVVRLAPLLDDPTDDAARTEAKNDVERQTETFATTI
VPSMMQLAATAPMRIVSGMLALFVERNDAVRVAQTRPGVAFLTIFLSRAETLRQGGGAAG
GEEPSADELDQWKQIFGLLFSRLTAGGKLPTLFPSTRAKAALPFGVGYYLSGGLGGATSG
LTSQMSSGGRYRNADVEDEPVWNLMAALAVSAGMEQQQVLVQELREKILENVVSAKEWSK
RNGGANAAGDELGPDLRIRNVNLLLHALNLDAAQITV
NT seq 2994 nt   +upstreamnt  +downstreamnt
atgtccttcttcggcttcgacaccgccctgccaagggacaagcctgccatccgtccaggc
cagcagcctcaccacgccagctcggccttcgaccccacctttgaccccactggcggcatc
gacgacgatgacaccctcgacgcaaagatcaaggcactcgccgccggcgcacaggaggat
gtggaaatctacacatggggccaggagggatacgacggcctcggagacaagctcgacgag
gcaaacgacgacttcaacgaagacacctttggcgacctcggtggcgatgtcggcaaggac
tttgactttggcgccgctgccggactcgatcccgtcaagcccggcgccaatcaccagaac
aacaataacaacaacgtcaattggcaggcccagcagccgcagcaccagcagcatgccgga
aaacgcgacaccgcatccgcctttgccaccaccctggacgagttctggatgacgcctccc
tcccgtttcggcgcccgcgacgaccgcccgacgacttcgcagccccagcagcagcagcag
cagcagcagttgcccaagcaggccgctccccgtacgctcgaggaagttgaggccgaaatg
cttgcaatgaggggcaaggttcagcctagccagccgccgcagcagcagcccgtggaggcc
gagtcgcagggccgggggaagcccatgacgctcgaagaagtcgaggcagagatgctggcg
cgtcgtggcgcggttgcccccgtccagaacgcatcacccgctaccagcgtgcaagaccca
aatcttcccgtcggactttcggcactgatgcagcagcagcagcagggtgcgttccctccg
ggcatgccgccaccgccgcctggctactcgcactcgccccagccgtcggtgggtctgcct
ggcatgccgcccatggtacctccgccaaacctgcgcatgatgccaggacaacagcctccg
accgcagcggccatgcaggcagcccagcagcaggcgcaggcagcccacttcgcccgcatg
cgcgccctgctcgaggctatgcccccgctcgtccagcagagcatcctctcgctcccgcca
cccatgcagttcgaatcgctcgagagcgtcgtcgttgcctaccccggcctgttggacccc
agccagcgcgagggcgcacccggctccgccgccgagcaggaggccgtcaagttcatgatg
gttaaggcccaagcccacatcgctgagctcgagcgggccgaggccaagcgcaagaggcgg
ctcgacaagatcgcttccatggcgcgctacaacggcctcatgtcgggctcggacaaagat
ttcatcacccgaatccagatcagccagctcattaccgccgacccgtacgccgatgacttt
tacgcgcacatctactttgcgctgcgaggcgggccgatgcgaccgggcgtccccgccgct
gtggtcccctcggccggcaacaacaacggcaacggcgccggaactaagcagggcaagggc
aagcagcggctaaacaagcagcaaaacgcgatgctgcggatgcagcagcaggtggagcgg
atcgtccaaaaccgcaaggagcggatcgaaaagagcgccagcggcgccgctctcgagggc
gcgctgggccgcgtcagcctgagtagcaccaagaaccccaggcagatgctccagatcaac
gcctctgaggcgtcgcccaaggccgggaccgccgccaccaccaagggccgggatagcccg
ggcgccggccacgcgcgcgacgccgtcaagcaggcgctcgagggcgccagcctcggccgt
gagggcgccaacgggcagcggagggatccgctcggcaagcacgaggtgctgcggatccta
gagaacctctacgacacagtgctcgcgctcgaacagaagcgccgcaatgcgcctcccgct
cccgctggcgaagctgctggtggtggtggcggtggtgacgacggcgaggcatccaaagcg
gcagcggatccggcggccgaccaggcgcgtgaggcgtacgaggcgtggcaggccgagcaa
gctgcgctgacggccaagctgtggaaggagctgcgggttctggagccgctcgagatttcg
gacccgcaccccttcgtctcgctgctgtcctgtgccaagggcaagcggctgctgccgcgt
gcgttgcgccacctgacgcccgagcagactttgacggcgctgacgatggtggtagcgtcg
tttgagaccctcgacgtggtgcggctggcgcctctgctcgacgacccgaccgacgacgcg
gccaggaccgaggccaagaacgacgtcgagaggcagaccgagacatttgccacgacgatt
gtgccgagcatgatgcagctcgccgccacggcgccgatgcgcatcgtcagcggcatgctg
gcgctgttcgtcgagcgcaacgatgcggtgcgcgtggcgcagacgcggccgggcgtggca
ttcctcaccattttcctgtcgcgcgctgagacgctgcgccagggcggcggcgcggcgggc
ggcgaggagccatcggctgacgagttggaccagtggaaacagatcttcggcttgctgttt
tcccgcctgacggcgggcggtaagctgcctactcttttcccatcaacgcgcgctaaggca
gctttaccgttcggagtgggctactacctctcgggcggcctcggtggggccacatcggga
ctgacgtcgcaaatgtcttcaggaggacgataccgcaatgccgacgtcgaagacgagccc
gtctggaacctcatggccgccctggccgtctcggcgggaatggagcagcaacaggtcctg
gttcaggagctccgcgagaagattctcgaaaacgtcgtttcggccaaggagtggagcaag
cgcaacggtggtgccaacgcggctggagatgagctcggtcccgatctgaggatccgaaac
gtcaacctcctccttcatgccctcaatctcgacgctgctcagatcaccgtctag

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