Pseudozyma flocculosa: PFL1_00878
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Entry
PFL1_00878 CDS
T03141
Name
(RefSeq) hypothetical protein
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
pfp
Pseudozyma flocculosa
Brite
KEGG Orthology (KO) [BR:
pfp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pfp03019
]
PFL1_00878
03041 Spliceosome [BR:
pfp03041
]
PFL1_00878
03036 Chromosome and associated proteins [BR:
pfp03036
]
PFL1_00878
Enzymes [BR:
pfp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PFL1_00878
Messenger RNA biogenesis [BR:
pfp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
PFL1_00878
mRNA cycle factors
Common to processing body (P body) and stress granule
PFL1_00878
Spliceosome [BR:
pfp03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
PFL1_00878
Chromosome and associated proteins [BR:
pfp03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
PFL1_00878
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
Utp25_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
19315007
NCBI-ProteinID:
XP_007876570
LinkDB
All DBs
Position
Unknown
AA seq
674 aa
AA seq
DB search
MTYENNAHQQQNGAGAAGLESRFANMSVQNGAAGGPPRKAYVPPHLRSAGGMNSNAPAFS
PKPPVNGGAADVAPPPAAPAAFNSGFNRGPPRGGSGWDTQGAGGYGGGRGGGYSSGPRSD
GFGTWKDGQHIIGAPNPRIQKELFGEDGDGSYQSTGINFDKYGDIPVEATGRDCPEPVTE
FTSPPIDPHLLDNIKLARYTHPTPVQKYSIPIVELGRDLMGCAQTGSGKTGGFLFPILSA
LFTHGPPPPPPEAAQGGFGRRKAFPSTLILAPTRELVSQIHDEARKFTYRSWVKPAVVYG
GADIGSQLRQIERGCDLLSATPGRLVDLMERGRISLSNVRFLVLDEADRMLDMGFEPQIR
RIVEGEDMPGVMDRQTLMFSATFPRDIQLLAKDFLKEYVFLSVGRVGSTSENITQKIEYV
EDEDKRSVLLDVLASMPTGGLTLIFVETKRMADMLSDFLLRSNIAATSIHGDRTQRERER
ALELFRGGRTPIMVATAVAARGLDIPNVTHVVNYDLPSDVDDYVHRIGRTGRAGNTGHAT
AFFNRGNKNIVRDLLELLKEANQEIPTWLEAVARESTFGSGGGRGGRGRGRGRGGSSFGN
RDARSGGSSFGGGAGRGGFGGGFGGGGGGYGGGGYGGGYGGGFGAPAPAAGGYGGPPPAS
QGGSYGGSNGPSWW
NT seq
2025 nt
NT seq
+upstream
nt +downstream
nt
atgacctacgaaaacaacgctcaccagcagcagaacggtgctggcgccgcaggtctcgag
tccaggttcgccaacatgtccgtccagaacggcgccgctggcggcccgccccgcaaggca
tacgtgcctcctcacctccgcagtgctggcggcatgaactcgaacgcgcccgcctttagc
cccaagccccccgtcaacggtggcgccgccgacgttgcgccgcctccggccgcgcccgcc
gccttcaacagtggcttcaaccgcggccctccccgcggcggcagcggctgggacacgcag
ggcgctggcggctacggcggcggccgcggtggcggatacagctccggcccccgcagcgat
ggtttcggcacgtggaaggacggccagcacatcattggcgcgcccaacccgcgcattcag
aaggagctcttcggcgaggacggcgacggctcttatcagagcaccggcatcaactttgac
aagtacggcgacatccccgtcgaggccaccggccgcgactgcccggagcccgtcaccgag
ttcaccagcccgccgattgacccgcacctgctcgacaacatcaagctcgcccgctacacg
caccccacgcccgtccagaagtactcgatccccattgtcgagctcggccgtgacctcatg
ggctgtgcccagaccggttccggcaagacgggtggtttcctgttccccatcctctcggcg
ctcttcacccacggcccgccgccgccgcctccggaggctgcccagggcggcttcggcagg
aggaaggccttccccagcaccctcatcctcgccccgacccgtgagctcgtctcgcagatc
catgacgaggcccgcaagttcacctaccgctcctgggtcaagcccgccgtcgtctacggc
ggtgccgacatcggctcccagctgcgccagatcgagcgtggctgcgacctcctctccgcc
acccccggccgtctcgtcgacctgatggagcgaggccgcatcagcctcagcaacgtccgc
ttcctcgtcctcgacgaggccgatcgcatgctcgacatgggtttcgagccccaaatccgc
cggattgtcgagggcgaggatatgcccggcgtcatggaccgccagacgctcatgttctcg
gcgacgttcccgcgcgacatccagcttctggccaaggatttcctcaaggagtacgtcttc
ctctcggtcggccgtgtcggctccacgtcggagaacatcacgcagaagatcgagtacgtc
gaggacgaggacaagcggtcggtgctgctcgacgtgctggcgtcgatgccgacgggcggt
ctgacgctcatctttgtcgagaccaagcgcatggccgacatgctgagcgacttcctgctc
cgctccaacatcgccgccacctcgatccacggcgaccgcacccagcgcgagcgcgagcgc
gccctcgagctgttccgtggcggacgcacgccgatcatggtcgctaccgccgttgccgcc
cgtggtctcgacatccccaatgtcacccacgtcgtcaactacgacctgccctcggacgtc
gacgactacgtccaccgtatcggccgaacgggtcgtgccggtaacaccggtcatgccacc
gccttcttcaaccgcggcaacaagaacatcgtccgcgacctcctcgagctgctcaaggag
gccaaccaggagatccccacgtggctcgaggccgtcgcccgcgagagcacctttggcagc
ggaggaggacgtggcggccgaggacgcggccgcggacgcggaggctcgtcgttcggcaac
cgtgacgcccgctccggaggtagcagcttcggcggcggtgccggtcgcggcggcttcggc
ggcggcttcggtggtggcggcggaggctacggcggcggaggatacggcggcggctacggt
ggaggcttcggcgcccctgcccccgccgctggcggatacggcggccccccgcccgcctcg
cagggcggcagctacggcggctccaacggcccgtcgtggtggtaa
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