Pseudozyma flocculosa: PFL1_00892
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Entry
PFL1_00892 CDS
T03141
Name
(RefSeq) hypothetical protein
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
pfp
Pseudozyma flocculosa
Pathway
pfp03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pfp00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
PFL1_00892
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pfp03021
]
PFL1_00892
03019 Messenger RNA biogenesis [BR:
pfp03019
]
PFL1_00892
Transcription machinery [BR:
pfp03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
PFL1_00892
Messenger RNA biogenesis [BR:
pfp03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
PFL1_00892
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Pcf11_C
CID
zf_PCFS4
Zn-C2H2_12
DUF7340
Pfc11_Clp1_ID
DUF1631
Motif
Other DBs
NCBI-GeneID:
19315021
NCBI-ProteinID:
XP_007876584
LinkDB
All DBs
Position
Unknown
AA seq
702 aa
AA seq
DB search
MYAGQNFGAPPQPPYAGPPPTYAGPPPTHPAAHRPTPPGQAYGAPLQYGGPPPQASSMGQ
GHVGGHDPLLIATNPDAFARMFREHLAALTWNSKPIINNLTIIAHEHIHRMASVVAKSLD
DHIMQSHPSIRLPSLYLLDSICKNIGQPYTSLWAERIVTIFLESYRLVDQPTKMRMEELL
ATWKDAAPGGRPLFGENTQWSIERPLFGSAGMPLPGHRPTPPPPQAQHHPHAHHAPPDHG
KARAIESIDRLLAMGAQELRVDPNNSAIRERHESLTQLKLVLQTAALSPEEMAQVHAQLD
SLTASGSKPPPAPVNATPPPAPAPAPAPIPANLASALAGLGNLGGLLGAPSVATTPPPAP
VAAPMPPPPAPAAPAASGQPDAASALIASLMQAGLLPGSGAAAAAAAPAPVELDQDDEYV
RSIMSLDIKVSGPEFSREPPALELLLHKHLPLQCRQCANRYPSGGKGQKGMDEHLDWHFT
QNRRAKDSQARGQSRSWFDKLDSFIRGGFDDAAPSSKAGDEAGAKDGSLNAAQDKALKEK
FAKSFVAAPTDAELSAKPCPICKESFKSQWSEDEEEWIWLNAIEVDGVYYHASCHYSAKM
LTESVARRMSSPPGGGRQSTGLLTAKRGTSRSATPSNGAQRSASVGNPIARLKGEEGIAS
STDGGPNGADAFGGTRKRKASVGEGDGQAQGAATEPPSKKVA
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
atgtacgccggtcagaactttggcgctcccccgcagcctccgtacgccgggccgccgccc
acctacgctggaccgcccccgacgcacccggcggcgcaccgaccaaccccacctggccag
gcctatggcgcgccccttcagtacggtggccccccgccccaggcctcgtcgatgggtcag
gggcacgtcggcggtcacgaccctctgctgatcgccaccaacccggatgcctttgctcgc
atgttccgggagcacctcgccgcgctcacctggaactcgaagccgatcatcaacaacctc
accatcatcgcccacgagcacatccaccggatggccagcgtcgtggccaagtcgctcgac
gaccacatcatgcagtcgcacccctcgatccggcttccgagcctctacctcttggactcg
atctgcaagaacatcggccagccctacaccagcctctgggcagaacgcatcgtcaccatc
tttctcgagtcgtaccgcctggtcgaccagcccaccaagatgcgcatggaggagctgctg
gccacgtggaaggacgccgcacccggcggccgcccgctgtttggcgaaaacacccagtgg
agcatcgagcggcccctgtttggcagcgccggcatgcctctgcccgggcacaggccgacg
cctccgccgcctcaggcgcagcaccaccctcacgcgcaccacgctcccccggatcacggc
aaggcacgagccatcgagagcatcgaccgcctccttgccatgggcgcccaagagctgcgg
gtggacccgaacaatagcgccatccgggagcgccacgaatcgctgacgcagctgaagctc
gtgctccagacggcggccctttcgcccgaggagatggcccaggtccacgcgcagcttgac
tcgttgacggccagcggcagcaagccgcctccggcacccgtcaacgcgacgccgcctccc
gcaccggcgccggcgccggctccgatcccagcaaacctcgccagtgcgctcgctggcctc
gggaacctcggcggcttgttgggagctccgtctgtcgccacaacaccgcctccagcgcct
gtcgccgctccgatgcccccgccgcccgctccagctgcgcccgcagcttccggtcagcct
gatgccgccagcgcgctgatcgcgagcctgatgcaggcaggcctcctccccggatccggc
gctgctgctgctgcggcggcacctgcacctgtagaactcgaccaggacgacgaatacgtc
cgatcgatcatgtcgctcgacatcaaggtgtcgggccccgagttttcgagggagccgccg
gccctcgagctgctccttcacaagcatctgccgctgcagtgcaggcagtgcgccaaccgc
tacccttccggcggcaagggtcagaagggcatggacgagcacctcgactggcactttacc
cagaaccgccgggccaaggactcgcaggcgcgaggccagagccgctcgtggttcgacaag
ctggacagctttatccgcggcggctttgacgatgccgcgccgtcgtccaaggcgggcgac
gaggcgggcgccaaggacggctctctgaacgcggcccaggacaaggcgctcaaggaaaag
tttgccaagtcgtttgtcgccgcgccgaccgacgccgagctgagcgccaagccgtgcccg
atctgcaaggagagcttcaagagccagtggagcgaggacgaggaggagtggatctggctg
aacgccatcgaggtcgacggagtgtactaccacgcatcgtgccactactcggccaagatg
ctgaccgagagcgtggcgcgacggatgagctcgccgcctggcggaggccgccagagcacg
ggcctgctgacggccaagcgtggcacgtcgcggtccgcgacgccgtcgaacggagcgcag
cggtcggcgtcggtaggcaacccgatagccaggctcaagggcgaagagggcatcgcgagc
tccaccgacggcggtccgaacggcgcagacgcctttggcggaacgaggaagcgcaaggcg
tcggtcggcgaaggcgacgggcaagcgcagggagccgcgacggagcctccgagcaagaag
gtggcgtga
DBGET
integrated database retrieval system
