Pseudozyma flocculosa: PFL1_01094
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Entry
PFL1_01094 CDS
T03141
Name
(RefSeq) hypothetical protein
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
pfp
Pseudozyma flocculosa
Pathway
pfp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pfp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PFL1_01094
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pfp03019
]
PFL1_01094
03041 Spliceosome [BR:
pfp03041
]
PFL1_01094
03009 Ribosome biogenesis [BR:
pfp03009
]
PFL1_01094
03016 Transfer RNA biogenesis [BR:
pfp03016
]
PFL1_01094
Enzymes [BR:
pfp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
PFL1_01094
Messenger RNA biogenesis [BR:
pfp03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
PFL1_01094
Spliceosome [BR:
pfp03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
PFL1_01094
Complex C
U4/U6.U5 tri-SnRNP related factors
PFL1_01094
Ribosome biogenesis [BR:
pfp03009
]
Eukaryotic type
Pre-60S particles
Helicases
PFL1_01094
Transfer RNA biogenesis [BR:
pfp03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
PFL1_01094
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
nSTAND3
Motif
Other DBs
NCBI-GeneID:
19315222
NCBI-ProteinID:
XP_007876785
LinkDB
All DBs
Position
Unknown
AA seq
1122 aa
AA seq
DB search
MDPDGLFDFLPPADGGASITELDADDQPQPSSSSTSPKKGRKNKNKRTADSAAASSSSSP
APAPVPAPAESATKSDDANGHPGAAAAAAAAADDDDDAQPGPSTKRQRIQPVPTVVTDEF
TAETTRSIAADPATAPATAASAAGDADQDSKSDAGPSSAKALKVSHSVRHQVALPPAYPY
VPLAQHVPNDPPAKRYNFELDPFQRNAVNCIERGESVLVSAHTSAGKTVVAEYAIAQCLK
NGQRVVYTSPIKALSNQKYREMTAEFGDVGLMTGDVTINPSASCLVMTTEILRSMLYRGS
EIMREVAWVIFDEIHYMRDKDRGVVWEETIILLPRKVRYVFLSATIPNAMQFAEWIAHTH
AQPCHVVYTDFRPTPLQHYLFPQGGDGIHLVVDERGTFREDNFQKAMGALADGKGEDPAD
ANAGAGKKKGQTKKGGQPKGPSDIYKIVKMIMVKNYNPVIVFAFSKRECEALALQMAKLE
FNTDDEKEMVSTVFTNAIDNLSEEDRSLPQIEHILPLLRRGIGIHHGGLLPILKEVIEIL
FQEGLIKVLFATETFSIGLNMPAKTVVFTAVRKWDGKEFRNLSSGEFIQMSGRAGRRGLD
DRGIVIMMFDEKLEPAAAKTMVKGEADRLDSAFHLGYNMVLNLMRVEGISPEYMLERCFF
QFQNAASVPMLEGELAAAEADRDAIEVPREDEVSEYYGMRKQLETLQSDVQAVITHPSYA
LPFLQPGRLVHVKHEELDFGWGSVVSVEKRLPGKGKALDPSAPPQQHYIVDVLLACAPGS
TVGKDKANAASSVQPCPPDAKAEMLVVPVLLSTVAGLSGIRIFLPKDLRPREPRETVRKN
LAEVRRRFPKGVPLLDPIKDMKIKDEAFAHLLAKISILETRLSESALSTDPELPRLYEAY
SRKQKANDMVEEIRRKIAAAHSVLQLDELKCRKRVLRRLGFTTADDVVEKKGRVACEIST
GDELLLTEMVFNGVFNELTPEQCAALLSCFVFGEKSEATVRLKEELASPLRIMQETARRI
AKVSRESRLPLVEEDYVSSFKVELMDAVLQWCRGAKFSEICKLTDVFEGSIIRVFRRLQE
LIRQMASAAKAIGNEELQKKFEAAMDKLERKSSIIFSPSLYL
NT seq
3369 nt
NT seq
+upstream
nt +downstream
nt
atggatccggatggcctcttcgactttctgcctcctgcagacggaggcgcctccatcaca
gagctagacgcagacgaccagccccaaccctcgtcctcgtccacctcgcccaagaagggc
aggaagaacaagaacaagcgcaccgcagactcggcagccgcttcctcttcatcctctcca
gcgccggcgccagtaccggcaccagcagaaagtgcgacaaagagcgacgatgccaacggc
caccccggcgccgccgccgccgccgccgccgccgccgacgacgacgacgacgctcagccc
ggcccctcgacaaagcggcagaggatacagccggtcccaaccgtagtcaccgacgagttc
acagcagagaccacccgctccatcgccgcagaccctgccaccgcacccgccaccgcagcc
tcggccgccggcgacgcagaccaagactcaaagtccgacgcaggcccgtcgtcggccaag
gcgctcaaggtctcgcactcggtccgccaccaggtcgccctgccccccgcatacccctac
gtcccgctcgcccagcacgtccccaacgacccgccggccaagcgctacaactttgagctc
gaccccttccagcgcaacgccgtcaactgcatcgagcgcggcgagtcggtcctcgtgtcg
gcccacacctcggcgggaaagacggtcgttgccgaatacgccatcgcacagtgcctcaaa
aacggccagcgcgtcgtctacaccagccccatcaaggccctctcgaaccaaaagtaccgc
gagatgacggccgagtttggcgacgtcggcctcatgactggcgacgtcaccatcaacccg
agcgcgtcgtgcctcgtcatgacgaccgagatcctgcgctcgatgctctaccgcggctcg
gaaatcatgcgcgaggtggcctgggtcatctttgacgagatccactacatgcgcgacaag
gaccgcggcgtcgtgtgggaggagaccatcatcctcctgccgcgcaaggtgcgctacgtc
ttcctctcggccaccatccccaacgccatgcagttcgccgagtggatcgcacacacccac
gcacagccctgccacgtcgtctacaccgacttccgccccacgccgctgcagcactacctc
tttccccagggcggcgacggcatccacctcgtcgtcgacgagcgcggcaccttccgagag
gacaacttccagaaggccatgggcgcgctcgcagacggcaagggcgaggaccccgccgac
gccaacgccggcgccggaaagaaaaagggccagaccaaaaagggcggccagccaaagggc
cccagcgacatctacaagattgtcaagatgatcatggtcaagaattataatccggtcata
gtgttcgcgttcagcaagcgcgagtgcgaggcgctggcgctgcagatggccaagctcgag
ttcaacaccgacgacgaaaaggagatggtcagcaccgtcttcaccaacgccatcgacaac
ctgagcgaggaggaccgctcgctgccgcagattgagcacatcctgccgctgctgcggcgc
ggcatcggcatccaccacggcggcctgctgcccatcctcaaggaggtcatcgagatcctc
ttccaggagggcctgatcaaggtcctctttgccaccgagacgttctccatcggcctcaac
atgcccgccaagacggtcgtcttcacggcggtgcgcaagtgggacggcaaggagttccga
aacctcagctcgggcgagtttatccagatgtctgggcgcgccggccggcgcggcctcgac
gaccgcggcatcgtcatcatgatgtttgacgagaagctcgagccggcggccgccaagacg
atggtcaagggcgaggccgaccgcctcgactcggccttccacctgggctacaacatggtg
ctcaacctgatgcgcgtcgagggcatctcgcccgagtacatgctcgagcgctgctttttc
cagttccagaacgccgccagcgtgccgatgctcgagggcgagctggccgccgccgaggcc
gaccgcgacgccatcgaggtgccgcgcgaggacgaggtgtccgagtactacgggatgcgc
aagcagctcgagacgctccagtccgacgtccaggccgtcatcacccacccgagctacgcg
ctgcccttcctgcagcccgggcggctggtccacgtcaagcacgaggagctcgactttggg
tggggcagcgtcgtcagcgtcgagaagcggctgccgggcaagggcaaggcgctcgacccg
agcgcgccgccgcagcagcactacattgtcgacgtcctcctcgcctgcgcgcccgggtcg
acggtgggcaaggacaaggccaacgcggccagcagcgtgcagccgtgcccgcccgatgcc
aaggccgagatgctggtggtgcccgtgctgctgtcgacggtggcgggcctgtcgggcatc
cgcatctttctgccaaaggatctgcggccgcgcgagccgcgcgagacggtgcgcaagaac
ctggccgaggtgcggcggcgcttccccaagggcgtgccgctgctggacccgatcaaggac
atgaagatcaaggacgaggcgtttgcccacctgctcgccaagatctcgatcctcgagacg
aggctgtccgagtcggcgctgtccacggatccggagctgccgcggctgtacgaggcctac
agccgcaagcaaaaggccaacgacatggtcgaggagatccggcgcaagattgccgcagcc
cacagcgtgttgcagctcgacgagctcaagtgccgcaagcgcgtgctgcgccgcctcggc
ttcacgacggccgacgatgtcgtcgagaaaaagggccgcgtggcgtgcgagatatcgacg
ggcgacgagctgctcctcaccgagatggtcttcaacggcgtctttaacgagctcacgccc
gagcagtgcgccgcgctgctgagctgctttgtgtttggcgaaaagagcgaagcgacggtg
cgactcaaggaagaactggcctcgccgctgcgcatcatgcaagagacggcgcggcggatc
gccaaggtgtctcgggaatcgcgcctgccgctcgtcgaggaggactacgtgtcgtcgttc
aaggtggagctgatggacgccgtgctgcagtggtgccgcggcgccaagttttcggaaatc
tgcaagctcaccgacgtctttgagggcagcatcatccgcgtctttcgacggctccaggag
ctcatccgccagatggccagcgccgccaaggctatcggcaacgaggagctccagaaaaag
tttgaagccgccatggacaagctggagcgcaagagcagcatcatcttcagcccctctctg
tacctctaa
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