KEGG   Pseudozyma flocculosa: PFL1_02068
Entry
PFL1_02068        CDS       T03141                                 
Name
(RefSeq) hypothetical protein
  KO
K14962  COMPASS component SWD2
Organism
pfp  Pseudozyma flocculosa
Pathway
pfp03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:pfp00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    PFL1_02068
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pfp03019]
    PFL1_02068
   03036 Chromosome and associated proteins [BR:pfp03036]
    PFL1_02068
Messenger RNA biogenesis [BR:pfp03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     PFL1_02068
Chromosome and associated proteins [BR:pfp03036]
 Eukaryotic type
  Histone modification proteins
   HMT complexes
    COMPASS/SET1 complex
     PFL1_02068
    COMPASS/SET1 complex (yeast)
     PFL1_02068
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_EML_2 EIF3I ANAPC4_WD40 Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 Beta-prop_WDR90_POC16_2nd NBCH_WD40 WDR55 WD40_MABP1-WDR62_2nd Beta-prop_WDR75_1st Beta-prop_SPT8 Beta-prop_TEP1_C WD40_MABP1-WDR62_1st Beta-prop_RIG_2nd Beta-prop_WDR35_TULP_N
Other DBs
NCBI-GeneID: 19316190
NCBI-ProteinID: XP_007877770
LinkDB
Position
Unknown
AA seq 409 aa
MAATSSAATHSNAAASSSSSLPSTKGPSSSSSPSSSSKAAPALSEPVTLTAPYLATFRPA
KVYSYSRKPDSQITSLCYDDRGQLVLSSSSDETLHIYDCITGKHVHETVSNKYGCHLARF
THHSSSVIYASTKQDETIRYHSVHHNSYLQYFRGHTGKVVGLEMSPVDDTFLSAAVDDSV
RLWDLRSPTSQGHLNLKGHPVVAYDLTGKVFAIALNQRSAILLYDTRKFDQAPFLTIHLD
DTRALSQISMPPRYPIITSLEFNNEGGHLLVGTSGDVHYVVDSFSGAILHRLVGHSGLEN
ASGAPIGMVPEAGISGAEVCWTSDGKLVLAGSANGQIVVWKIPDEPQQQQQQGQQGYPAG
GDIPNLNPTTVIPGHEGPVRCLAFSPRLAQLTTGSSQLVLWLPEPPSDI
NT seq 1230 nt   +upstreamnt  +downstreamnt
atggcagccacctcctccgcggcgacacattccaacgccgcggcatcctcctcgtcctct
ttgccatccaccaaaggcccatcatcgtcgtcgtcgccgtcgtcgtcgtccaaggcagca
cccgcgctctcggaacccgtcaccctcaccgcgccctacctcgccacgttcagacccgcc
aaagtctactcctactcccgcaagccagactcgcagatcacatcgctatgctacgacgac
cgcggtcagctcgtcctctcgtcgtcgagcgatgagacgctccacatctacgactgcatc
acgggcaagcacgtccacgagaccgtcagcaacaagtacggctgccacctcgccaggttc
acccaccactcgtcctcggtcatctacgccagcacaaagcaggacgaaaccatccgctac
cactcggtacaccacaactcctacctccagtactttcgcggccacaccggcaaggtcgtc
ggcctcgaaatgagccccgtcgacgacaccttcctctcggccgccgtcgacgactcggta
cgcctctgggacctccgctcgcccaccagccagggccacctcaacctcaaaggccacccc
gtcgtcgcttacgacctcaccggaaaggtctttgccatcgcactcaaccagcgcagcgcc
atcctcctctacgacacgcgcaagtttgaccaggccccgttcctcaccatccacctcgac
gacacccgcgctctgtcgcagatatcgatgccgccgcggtaccccatcatcacctcgctc
gagttcaacaacgagggcggtcacctcctcgtcggcacctcgggcgacgtccactacgtc
gtcgactcgttctccggcgccatcctgcatcgcctcgtcggacactctggcctggaaaac
gcatcgggcgcccccatcggcatggttccagaggccggcatcagtggtgccgaagtttgc
tggacgtcggacggcaagctggtcctcgccggctcggccaatggccagattgtcgtctgg
aagatccccgacgagccgcaacaacaacagcaacaggggcagcagggatacccggcgggt
ggcgacatacccaacctcaaccccaccaccgtcatcccgggccacgaaggccccgtccgc
tgtctcgccttcagcccgaggctggctcaattgaccaccggatcgtcccaactcgtcctc
tggcttcccgagccgccgtcagacatctga

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