Pseudozyma flocculosa: PFL1_02407
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Entry
PFL1_02407 CDS
T03141
Name
(RefSeq) hypothetical protein
KO
K14556
U3 small nucleolar RNA-associated protein 12
Organism
pfp
Pseudozyma flocculosa
Pathway
pfp03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
pfp00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
PFL1_02407
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pfp03009
]
PFL1_02407
Ribosome biogenesis [BR:
pfp03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
PFL1_02407
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR3_2nd
Beta-prop_WDR3_1st
Beta-prop_WDR5
Beta-prop_IFT122_1st
Beta-prop_THOC3
WD40
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
EIF3I
Beta-prop_WDR36-Utp21_1st
Utp12
WDR55
Beta-prop_TEP1_2nd
Beta-prop_WDR36-Utp21_2nd
WD40_Gbeta
Beta-prop_EML
WD40_MABP1-WDR62_2nd
ANAPC4_WD40
DSE1_N
Beta-prop_CAF1B_HIR1
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR75_1st
ASA1
Beta-prop_SCAP
Beta-prop_Nup120_160
Beta-prop_WDR41
WDR90_beta-prop_4th
Beta-prop_IFT140_1st
Beta-prop_RIG_2nd
Beta-prop_VPS8
Beta-prop_NOL10_N
Beta-prop_Aladin
WD40_MABP1-WDR62_1st
NBCH_WD40
CFAP251_N
Beta-prop_RIG_1st
WD40_RFWD3
PAC11
WDR54
Beta-prop_SPT8
Beta-prop_Vps41
Beta-prop_WDR19_1st
WD_LRWD1
Beta-prop_ACSF4
Beta-prop_HPS5
PROPPIN
Beta-prop_NUP159_NUP214
Cytochrom_D1
Utp21
Utp13
Motif
Other DBs
NCBI-GeneID:
19316527
NCBI-ProteinID:
XP_007878110
LinkDB
All DBs
Position
Unknown
AA seq
1066 aa
AA seq
DB search
MVRSYLRHAPTQAFGLIASPTSNSILDSNAKVAFVPALEDVLVWDVKKGLLLSTWHEVGH
RSKVTALARSPFNKDTFAVGYEDGSIRIWSAQSASTTITLNGHKKAVTSLAFDSQGLRLA
SASLDTDVILWDVVAETGLFRLRGHRDAVTAVAFIHTPVAASESGPSSSANATAAASSSS
SSAPGYLLSSSKDGLVKLWDLSLQHCVETVVPGRGEIWSLAVSQEVPLLSSGSKPTRDGE
SADDVHDGAALVLTGSSEGEMRVWEISAEALINGISGLSKPDDDAALAGSAATTATTSKF
LIPRGSVPLLSNHRVSQIQFCGNTALAGQGYIAVSSTDKAVQIFRLRTSDEVAKKMARRR
KRMKEKAEKKAKGKQGDAAAGAGAGAEDDEGSIEVTWADRIEAYTNVRPTAGKLRSFSTV
VPESTSSNKIGLSLLCALSTNAIEVHNIPPPPKSKAEKAEPIEPVLASALDLPGHRADVR
AIALSSDDSLLATACGAGQLKIWNVQTGRCVRTLPCSYALSVAWLPGDQHVLVGCKDGTL
RSFDVRAGIAIETIQAHEGPLWSIAMRPDGLGCVSASADKDVKFWDFEMRAEESSDDESD
DDDDDHDDDTEPKQKPAKGPPQLALVHVRTLKMTDDVLCARFSPNGKLLALSLLDNTVKV
FYSDSLKFFLSLYGHKLPVLSLDISQDSKLCVTVSADKNVKIWGLDFGDCHKSIFAHDES
IMGVCFEHGQQGGGLFGGRQGDSHHFWTVGKDGMLKHWDGDRFELIQQLEGHHGEVWAVT
PGHRGQMVVTAGADRSIRTWEKTDEPLFLEEERERELERAYDSAAAATSRDEGRAIGSLA
DGADPDSAVPSGPESTAVSKSTAETMVAGERLIEALDIADADIAARELAIKNNVPPPPFH
ALVVSAFESDGKRTVDEEVSAQKYVLKTVEKILPAQLEDALLVLPFDKVLSLLRFLDHWA
RKEWNTTLVSRILFFLLRTHHAQIVSNRVMRPTLVSLRGHLRNALARQKTTIGFNLAALK
YVRAQHIAAKTTEMYEKSGLDMDEDAVRARIEAMSKGRGKRKLQVG
NT seq
3201 nt
NT seq
+upstream
nt +downstream
nt
atggtccgctcctacctccgccacgcacccacccaggcctttggcctcatcgcatcccct
acctccaactcaatcctcgactccaacgcaaaggtcgcattcgtacccgcactcgaagac
gtactcgtgtgggacgtcaaaaagggcctcctcctctcgacctggcacgaggtcggtcac
cgctcaaaagtcaccgcactcgcacgcagccccttcaacaaagacacctttgccgtcggc
tacgaggacggcagcatccgcatctggtccgcacagtccgcctccaccaccatcacgctc
aacggccacaaaaaggcagtcacctccctcgccttcgacagccagggcctccgcctcgcc
agcgcaagcctcgataccgatgtcatcttgtgggacgtcgtcgcagagaccggcctcttc
cgtctccgcggccacagggacgcagtcaccgccgtcgccttcatccacacgccagtggct
gcttccgaatcaggcccttcgtcctctgccaatgctaccgccgccgcctcttccagcagc
tcctccgcccccggctatctgctcagctcgtccaaggatggcctcgtcaagctctgggac
ctctcgcttcagcactgcgtagagactgtggtgcccggacgaggcgagatctggagcctc
gcagtgtcgcaggaggtgccgctcctctccagcggctcgaaaccgacaagggacggcgag
agcgcagacgacgtgcacgacggcgcagcactcgttctcaccggcagctccgagggtgaa
atgcgggtgtgggagatctcggcagaggccctcatcaacggcatcagcgggctcagcaag
cctgacgacgacgccgcactggccggctctgcagcgacgacggcgacgacgtccaagttc
ctcatcccgcggggctcggtgccgcttttgagcaaccaccgcgtctcgcagatccagttc
tgcggcaacacggccctcgcaggccagggctacatcgccgtgtcgagcaccgacaaggcg
gtccagatcttccgcctccgaacatcggacgaagtggccaagaagatggcacgtaggcgc
aagaggatgaaggagaaggccgaaaagaaggccaagggaaagcagggcgatgccgccgcc
ggtgctggtgccggtgccgaggacgacgaggggtccatcgaagtcacctgggccgatcgc
atcgaggcgtacaccaacgtccggccgacggcgggcaagctgcgcagcttcagcaccgtc
gttccggagtcgacgagctccaacaagatcggactcagcctgctttgcgctctctcgacc
aacgccatcgaggtccacaacatcccgccgccgcccaagagcaaggcggaaaaggccgag
cccatcgagcccgtgctggcatctgcccttgacctgcccggccaccgcgccgacgtgcgt
gccatcgctctctcgtcggatgactcgctgctggccaccgcgtgcggtgcgggtcagctc
aagatctggaacgtccagaccgggcggtgcgtccggacgctgccctgctcgtacgcgctc
agcgtcgcctggctcccgggggaccagcacgtcctcgtcggctgcaaggacggcacgctc
cgcagcttcgacgtccgcgccggcatcgccatcgagacgatccaggcgcacgagggcccg
ctgtggagcatcgccatgcggcccgacggcctcgggtgcgtcagcgccagcgccgacaag
gacgtcaagttctgggactttgagatgcgggccgaggagagcagcgacgacgagtccgac
gacgacgacgacgaccacgacgacgacacggaaccaaagcagaagccggccaagggcccg
ccgcagctggcgctggtgcacgtccgcacgctcaagatgaccgacgacgtcctgtgcgcg
cgtttctcgcccaacggcaagctgctggcgctctcgctcctcgacaacacggtcaaggtg
ttttactcggactcgctcaagttcttcctctcgctctacggccacaagctgccggtgctg
tcgctcgacatttcgcaggacagcaagctgtgcgtcaccgtgtcggccgacaagaatgtc
aagatctggggcctcgactttggcgactgccacaagtcgatctttgcccacgacgagagc
atcatgggcgtctgcttcgagcacggccagcagggcggcgggctgtttggcggcaggcag
ggcgactcgcaccacttctggaccgtcggcaaggacggcatgctcaagcactgggacggc
gaccgcttcgagctcatccagcagctcgagggccaccacggcgaggtgtgggcggtcacg
cccggacatcggggccagatggtcgtgacggcgggtgcggaccggtcgatccggacgtgg
gaaaagaccgacgagcccctgttcctcgaggaggagcgcgagcgcgagctggagcgggcc
tacgactctgcggcggcggccacctcgcgcgacgagggtcgcgccatcggctcgctggcc
gacggtgccgaccccgactcggcagtgccgagcggtccggagtcgacggccgtgtccaag
tcgacggccgagacgatggtggcgggcgagcggctgatcgaggcgctcgacatcgccgac
gctgacattgcggcgcgcgagctggccatcaagaacaatgtgcccccgccgcccttccac
gccctcgtcgtgtcggcgttcgagtcggacggcaagcgcaccgtcgacgaggaggtgagc
gcgcaaaagtacgtgctcaagacggtcgaaaagatcctgcccgcgcagctcgaagacgcg
ctactggtgctgccgtttgacaaggtgctcagcctgctgcgcttcctcgaccattgggca
agaaaggagtggaacacgacgctcgtctcgcgcatcctcttcttcctgctgcgcactcac
cacgcccagatcgtatctaacagggtcatgcggccgacgctcgtctcgctgcgcggacac
ctgcgcaacgccctcgcccgccagaagacgacgatcgggttcaacctggcggcgctcaag
tacgtccgggcgcagcacattgccgccaagacgacggagatgtacgaaaagtcgggtctg
gacatggacgaggatgcggtgcgggcgcgcatcgaggccatgtccaagggcaggggcaag
aggaagctccaggtcggctga
DBGET
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