KEGG   Pseudozyma flocculosa: PFL1_03907
Entry
PFL1_03907        CDS       T03141                                 
Name
(RefSeq) hypothetical protein
  KO
K12880  THO complex subunit 3
Organism
pfp  Pseudozyma flocculosa
Pathway
pfp03013  Nucleocytoplasmic transport
pfp03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pfp00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    PFL1_03907
  09122 Translation
   03013 Nucleocytoplasmic transport
    PFL1_03907
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pfp03019]
    PFL1_03907
   03041 Spliceosome [BR:pfp03041]
    PFL1_03907
Messenger RNA biogenesis [BR:pfp03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     PFL1_03907
Spliceosome [BR:pfp03041]
 Complex C
  Other components
   EJC/TREX
    PFL1_03907
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    PFL1_03907
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_IFT122_1st Beta-prop_WDR5 WD40 WD40_CDC20-Fz WD40_Prp19 Beta-prop_EML_2 Beta-prop_WDR3_1st WD40_WDHD1_1st ANAPC4_WD40 Beta-prop_WDR3_2nd Beta-prop_WDR90_POC16_2nd EIF3I Beta-prop_WDR36-Utp21_2nd Beta-prop_TEP1_2nd WDR55 Beta-prop_RIG_2nd Beta-prop_CAF1B_HIR1 Beta-prop_Aladin Beta-prop_WDR36-Utp21_1st WD40_MABP1-WDR62_2nd WD40_Gbeta Beta-prop_EML WDR90_beta-prop_4th Tricorn_2nd Beta-prop_WDR19_1st Beta-prop_WDR35_TULP_N Beta-prop_NOL10_N Beta-prop_EIPR1 DSE1_N Beta-prop_WDR75_1st Beta-prop_TEP1_C Beta-prop_WDR41 WD40_MABP1-WDR62_1st PD40 Beta-prop_HPS5 B-prop_COPA_B_2nd WD_LRWD1 Tachylectin TRM82_WD
Other DBs
NCBI-GeneID: 19318014
NCBI-ProteinID: XP_007879621
LinkDB
Position
Unknown
AA seq 360 aa
MALTAPPSDAALFRERGITLPSFQNYKPSKELKGGHRLSVRGVAWSIDGRKLASCGADRS
VRVWTPERSVDVRASTELRGHTESVDQLAWSPTAPDQIATASADKSVRIWDIRSAKATQV
ISTPGSNINIAYHPHGHQVAVGDKADTISIIDVKMGRIVETVQDRSRGPVEEINEFTWSP
DGSLFLLTSGTGSIHIHDARNPLEGDANTAKGAATRWSRLHTMVAHTANVFCIEMDPSSR
YMATASADSMIGLWALDEWMSVRMSGSLSFPARSLSFSHDGEFLAAGGEDPWIDISSVAT
GNTVYKLPVTGMINTLAWHPSKLYLAYAGDEPPSTTASGGGGSAASSAAKDNGVIRIFGL
NT seq 1083 nt   +upstreamnt  +downstreamnt
atggcgctgacggcaccaccctccgacgccgccctgttccgggagcgcggcatcacactg
ccgtcgttccaaaattacaagccgtccaaggagctcaagggcggccaccgactcagcgtt
cgcggcgtcgcgtggtccatcgacggccgcaagctcgccagctgcggcgccgaccgatcc
gtgcgcgtatggacgcccgagcgcagcgtcgacgtgcgcgcttccaccgagctccgaggt
cacaccgagagcgtcgaccagctcgcctggagccccactgcgccggatcagatcgccacc
gcgtcggcggacaagtcggtcaggatatgggacattcgctcggcaaaggcgacgcaggtc
atttcgacgcccgggtccaacatcaacatcgcctaccacccgcacggacaccaggtggca
gtgggcgacaaggcggacacgatcagcatcatcgacgttaagatgggccggatcgtcgag
acggtccaggaccgcagccgcgggccggtcgaggagatcaacgagtttacctggtcgccc
gatggctccctcttcctcctcaccagcggcacgggcagcatccacatccacgacgcccgc
aacccgctcgagggcgacgccaacacggccaagggcgccgccacgcgctggtcccgcctc
cacaccatggtcgcccacacggccaacgtgttttgcatcgaaatggaccccagctcgagg
tacatggccaccgcctcggccgatagcatgattggcctgtgggccctcgacgagtggatg
agcgtccgcatgtccggctccctctcgtttcccgcccgcagcctgagcttctcgcacgac
ggcgagttcctcgcagccggcggagaggatccgtggatcgacatttcatcggtggcgacg
ggcaacacggtgtacaagctgcccgttacgggcatgatcaacacgctcgcctggcacccg
agcaagctctacctcgcctacgccggagacgagccgccctcgacgaccgccagcggcggc
ggaggaagcgctgcctctagcgccgcaaaggacaacggcgtcatccgcatctttggcttg
tag

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