KEGG   Pseudozyma flocculosa: PFL1_04604
Entry
PFL1_04604        CDS       T03141                                 
Name
(RefSeq) hypothetical protein
  KO
K03679  exosome complex component RRP4
Organism
pfp  Pseudozyma flocculosa
Pathway
pfp03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pfp00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    PFL1_04604
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pfp03019]
    PFL1_04604
Messenger RNA biogenesis [BR:pfp03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     PFL1_04604
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Core exosome
     PFL1_04604
SSDB
Motif
Pfam: RRP4_S1 ECR1_N KH_6 RRP40_S1 EXOSC1
Other DBs
NCBI-GeneID: 19318705
NCBI-ProteinID: XP_007880321
UniProt: A0A061H768
LinkDB
Position
Unknown
AA seq 407 aa
MSAATQGTSTNAGPAAFTVLTSRKRRQGSAGPSTSYHVHHSGARHPCSSSSASSSSSSTK
PGYALDALSAAHLGHGDAMDMDDDPTSADDGGDGATTIAVPGEPLASSSLFMRGHGTTLS
STGTITSTVAGTLVLTNKLLSIPPIRSRYIPEIGDLVIGQVTSLSPKRWKVDIHSRSDAS
LQLSSINLPGGVQRRKLESDELQMRNFFKEDDWVVAEVQSVFHDGTVGLHTRSLRYGKLR
NGTVQKVEAGRVKRLKSHFCDVTLAPPRAGHDEAALDRDRDPGRDAAKPVKLDLILGLNG
YIWIAKHVPFSLSKAEGTEGQGMAGTGTGRDVDAVYTDDNEEIDTATRAAISTARKVIAI
LDAWCVPISDVAVERAYETLVELHRGEGDVEPEVQRIVVESTLEAVA
NT seq 1224 nt   +upstreamnt  +downstreamnt
atgtcggccgccacgcagggcaccagcacgaatgcgggccccgccgccttcaccgtcctc
acatcgcgcaagcggcgtcagggatctgcggggccctcgacttcctaccacgtccaccac
tctggcgcgcggcatccctgctcgtcgtcgtcggcgtcatcatcatcatcaagcacaaag
ccagggtatgcgctcgacgccctgtcggccgctcacctcggccacggcgatgcgatggac
atggatgacgacccgacctcggccgacgacggcggcgacggcgccaccaccattgccgtt
cccggcgagccgctggcctcgtcgtcgctctttatgcgcggacacggcaccacgctcagc
agcacggggaccatcacctcgaccgtggcggggacgctggtgctgaccaacaagctgctc
agcatcccgcccatccgctcgcgctacatccccgagattggcgacctcgtcatcggccag
gtcacgtcgctctcgcccaagcgctggaaggtcgacatccactcgcgctccgacgcctcg
ctccagctctcgtccatcaacctgcccggcggtgtgcagcgcaggaagctcgagagcgac
gagctccagatgcgcaacttcttcaaggaagacgactgggtcgtcgcagaggtccagagc
gtcttccacgacggcaccgtcggcctccacacccgctcgctgcgctacggcaagctgcgc
aacggcaccgtccagaaggtcgaggccggccgcgtcaagcgcctcaagtcgcacttttgc
gacgtcaccctcgcgccgccccgcgccggccacgacgaggcggcgctggatcgggatcgg
gaccccggccgcgacgccgccaagccggtcaagctcgacctcatcctcggcctcaacggc
tacatctggatcgccaagcacgtgccctttagcctgtccaaggccgaggggaccgagggc
cagggaatggcggggacgggcacgggcagggacgtcgacgccgtctacaccgacgacaac
gaggagatcgacaccgccacgcgcgccgccatctcgacggccaggaaggtcattgccatc
ctcgacgcctggtgcgtccccatcagcgatgttgccgtcgagagggcgtacgagaccctc
gtcgagctccaccgcggcgagggcgacgtcgagcccgaggtgcagaggatcgtcgtcgag
agcacgctcgaggccgtggcctag

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