Pseudozyma flocculosa: PFL1_04604
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Entry
PFL1_04604 CDS
T03141
Name
(RefSeq) hypothetical protein
KO
K03679
exosome complex component RRP4
Organism
pfp
Pseudozyma flocculosa
Pathway
pfp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pfp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PFL1_04604
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pfp03019
]
PFL1_04604
Messenger RNA biogenesis [BR:
pfp03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
PFL1_04604
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
PFL1_04604
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRP4_S1
ECR1_N
KH_6
RRP40_S1
EXOSC1
Motif
Other DBs
NCBI-GeneID:
19318705
NCBI-ProteinID:
XP_007880321
UniProt:
A0A061H768
LinkDB
All DBs
Position
Unknown
AA seq
407 aa
AA seq
DB search
MSAATQGTSTNAGPAAFTVLTSRKRRQGSAGPSTSYHVHHSGARHPCSSSSASSSSSSTK
PGYALDALSAAHLGHGDAMDMDDDPTSADDGGDGATTIAVPGEPLASSSLFMRGHGTTLS
STGTITSTVAGTLVLTNKLLSIPPIRSRYIPEIGDLVIGQVTSLSPKRWKVDIHSRSDAS
LQLSSINLPGGVQRRKLESDELQMRNFFKEDDWVVAEVQSVFHDGTVGLHTRSLRYGKLR
NGTVQKVEAGRVKRLKSHFCDVTLAPPRAGHDEAALDRDRDPGRDAAKPVKLDLILGLNG
YIWIAKHVPFSLSKAEGTEGQGMAGTGTGRDVDAVYTDDNEEIDTATRAAISTARKVIAI
LDAWCVPISDVAVERAYETLVELHRGEGDVEPEVQRIVVESTLEAVA
NT seq
1224 nt
NT seq
+upstream
nt +downstream
nt
atgtcggccgccacgcagggcaccagcacgaatgcgggccccgccgccttcaccgtcctc
acatcgcgcaagcggcgtcagggatctgcggggccctcgacttcctaccacgtccaccac
tctggcgcgcggcatccctgctcgtcgtcgtcggcgtcatcatcatcatcaagcacaaag
ccagggtatgcgctcgacgccctgtcggccgctcacctcggccacggcgatgcgatggac
atggatgacgacccgacctcggccgacgacggcggcgacggcgccaccaccattgccgtt
cccggcgagccgctggcctcgtcgtcgctctttatgcgcggacacggcaccacgctcagc
agcacggggaccatcacctcgaccgtggcggggacgctggtgctgaccaacaagctgctc
agcatcccgcccatccgctcgcgctacatccccgagattggcgacctcgtcatcggccag
gtcacgtcgctctcgcccaagcgctggaaggtcgacatccactcgcgctccgacgcctcg
ctccagctctcgtccatcaacctgcccggcggtgtgcagcgcaggaagctcgagagcgac
gagctccagatgcgcaacttcttcaaggaagacgactgggtcgtcgcagaggtccagagc
gtcttccacgacggcaccgtcggcctccacacccgctcgctgcgctacggcaagctgcgc
aacggcaccgtccagaaggtcgaggccggccgcgtcaagcgcctcaagtcgcacttttgc
gacgtcaccctcgcgccgccccgcgccggccacgacgaggcggcgctggatcgggatcgg
gaccccggccgcgacgccgccaagccggtcaagctcgacctcatcctcggcctcaacggc
tacatctggatcgccaagcacgtgccctttagcctgtccaaggccgaggggaccgagggc
cagggaatggcggggacgggcacgggcagggacgtcgacgccgtctacaccgacgacaac
gaggagatcgacaccgccacgcgcgccgccatctcgacggccaggaaggtcattgccatc
ctcgacgcctggtgcgtccccatcagcgatgttgccgtcgagagggcgtacgagaccctc
gtcgagctccaccgcggcgagggcgacgtcgagcccgaggtgcagaggatcgtcgtcgag
agcacgctcgaggccgtggcctag
DBGET
integrated database retrieval system