Pseudozyma flocculosa: PFL1_04668
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Entry
PFL1_04668 CDS
T03141
Name
(RefSeq) hypothetical protein
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
pfp
Pseudozyma flocculosa
Pathway
pfp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pfp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
PFL1_04668
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pfp03041
]
PFL1_04668
Enzymes [BR:
pfp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
PFL1_04668
Spliceosome [BR:
pfp03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
PFL1_04668
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
WHD_HA2
DEAD
HA2_C
AAA_22
AAA_19
AAA_30
nSTAND_NTPase5
nSTAND3
AAA_16
T2SSE
Cas3-like_C_2
SRP54
ABC_tran
PhoH
ATPase
Motif
Other DBs
NCBI-GeneID:
19318769
NCBI-ProteinID:
XP_007880385
UniProt:
A0A061H624
LinkDB
All DBs
Position
Unknown
AA seq
718 aa
AA seq
DB search
MDAQMGGSGGGSLTLKPEDKLLQEKIAAAESAAAKIEATRKSLPVYALREELLDAIAEHQ
VLIVVGETGSGKTTQLPQFLHEAGYTRGGKKVGCTQPRRVAAMSVAARVAEEMGVRLGRE
CGYSIRFEDCTSDVTVLKYMTDGMLLREFLTEPDLGAYSALIIDEAHERTLSTDVLFGLV
KDIARFRPDLKLLISSATLDAEKFSEYFDDAPIFYVPGRRYPVDIHYTPQPEANYLHAAI
TTVFQIHTTQPKGDILVFLTGQDEIDAAMENLQETSRALGNKIPELIVCPIYANLPSEMQ
AKIFEPTPEGARKVVLATNIAETSITIDGVVFVIDPGFVKQNSYNPKTGMAALTVVPCSR
ASANQRAGRAGRVGPGKCFRLFTKWAFQNELDENTTPEIQRTNLANVVLLLKSLGINDLL
NFDFLDPPPTDTLMRSLELLYALGALNDKGELTKLGRRMAEFPVDPQISKAILASEQYAC
TEEVLSIVSILPEAGSLFFRPKDKKVHADNARAAFLPPPPATAGAPSGGDHFHLLNIWNA
YVESGYATNWCVDNFLQPKVLARVRDVRDQLAALCERVEIVPASVADSGGSGAGGSRDGN
ERIQLAILSGYFINTARLAKGGETYKPIKGTAAVHIHPSSALYKQIPQPNTVCFFELVET
SKSFMRQCMAVQPGWLLQVAKHYFTPDDVVEKQKGPRNVGAPAAAAAAAGAAAKEARA
NT seq
2157 nt
NT seq
+upstream
nt +downstream
nt
atggacgcccagatgggaggcagcggcggcggctcgctcacgctcaagcccgaggacaag
ctgctgcaggagaagattgccgccgcagagtcggcggcggccaagatcgaggcgacacgc
aagtcgctgcccgtctacgcgctgcgcgaggagctgctcgacgccatcgccgagcaccag
gtgctgatcgtcgtgggcgagacgggctcgggcaagacgacgcagctgccccagttcctg
cacgaggccggctacacgcgcggcggcaaaaaggtcgggtgcacgcagccgcggcgcgtg
gccgccatgagcgtggcggcgcgcgtggccgaggagatgggcgtgcgcctgggccgcgag
tgcggctacagcatccgcttcgaggactgcacctcggacgtcacggtgctcaagtacatg
accgacggcatgctgctgcgcgagttcctcaccgagcccgacctgggcgcctactcggcc
ctcatcatcgacgaggcccacgagcgcaccctcagcaccgacgtcctgttcggcctggtc
aaggacattgcgcgcttccgcccggacctcaagctcctcatttcgtcggccacgctcgac
gcggaaaagttcagcgagtactttgacgacgcccccatcttttacgtccccggccgccga
tacccggtcgacatccactatacgccgcagcccgaggccaactacctgcacgccgccatc
acgaccgtgttccagatccacacgacgcagcccaagggcgacatcctcgtcttcctgacg
ggccaggacgagatcgacgcggccatggagaacctgcaggagacgagccgggcgctgggc
aacaagatccccgagctcatcgtgtgccccatctacgccaacctgccgtccgagatgcag
gccaagatctttgagccgacgcccgagggcgcgcgcaaggtggtgctggcgaccaacatt
gccgagacgagcatcacgatcgacggcgtcgtctttgtcattgacccgggctttgtcaag
cagaactcgtacaacccaaagacgggcatggcggcgctgaccgtggtgccgtgctcgcgc
gcctcggccaaccagcgcgccgggcgggcgggccgcgtggggccgggcaagtgcttccgg
ctcttcaccaagtgggcctttcagaacgagctcgacgagaacacgacgcccgagatccag
cggaccaacctggccaacgtcgtgctgctcctcaagagcctgggcatcaacgacctgctc
aactttgactttctcgacccgccgcccaccgacacgctgatgcgctccctcgagctcctc
tacgccctcggcgcgctcaacgacaagggcgagctgaccaagctggggcggcgcatggcc
gagttccccgtggacccgcagatctccaaggccatcctcgcctcggagcagtacgcgtgc
accgaagaggtgctgtcgattgtctcgatcctgcccgaggccggctccctctttttccgg
cccaaggacaaaaaggtgcacgccgacaacgcgcgtgccgcctttttgccgccgccgccc
gccacggccggtgcgccgtccggcggcgaccacttccacctgctcaacatctggaacgcc
tatgtcgagtccggctacgccaccaactggtgcgtcgacaacttcctccagcccaaggtg
ctggcgcgcgtccgcgacgtgcgcgaccagctggcggcgctgtgcgagcgcgtcgaaatc
gtaccggcctcggtcgccgactcgggcggcagcggcgccggcgggtcgcgggacggcaac
gagaggatccagctcgccatcctctctggctactttatcaacacggcgcgcctggcaaag
ggcggcgagacgtacaagcccatcaagggcacggccgcggtgcacatccacccttcgagc
gcgctctacaagcagattccgcagcccaacacggtgtgctttttcgagctggtcgagacg
agcaagagcttcatgcgccagtgcatggccgtccagccagggtggctgctccaggtggcc
aagcactactttacgcccgacgacgtcgtggaaaagcaaaagggcccgcgcaacgtcggc
gcccctgctgcagcggcggcggcggccggtgctgcggcgaaagaggcgcgggcctaa
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integrated database retrieval system
