Pseudozyma flocculosa: PFL1_04859
Help
Entry
PFL1_04859 CDS
T03141
Name
(RefSeq) hypothetical protein
KO
K12879
THO complex subunit 2
Organism
pfp
Pseudozyma flocculosa
Pathway
pfp03013
Nucleocytoplasmic transport
pfp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pfp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
PFL1_04859
09122 Translation
03013 Nucleocytoplasmic transport
PFL1_04859
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pfp03019
]
PFL1_04859
03041 Spliceosome [BR:
pfp03041
]
PFL1_04859
Messenger RNA biogenesis [BR:
pfp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
PFL1_04859
Spliceosome [BR:
pfp03041
]
Complex C
Other components
EJC/TREX
PFL1_04859
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
PFL1_04859
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
THOC2_N
Tho2
Thoc2
Motif
Other DBs
NCBI-GeneID:
19318959
NCBI-ProteinID:
XP_007880578
UniProt:
A0A061H4B6
LinkDB
All DBs
Position
Unknown
AA seq
1874 aa
AA seq
DB search
MAAPSQQVGDAMSSSTLDGFVSKEQACERLEQGLLAAAGLIINEAFFSKRTIQLRTARLF
KQQKFNLLREENEGYSGLIVEITRGIGPPIVAAYADEGAAEGAAPPARPDSPVMVVEQES
PLERNRRAARVMNNIQALIGYFDLDANRVLDIMLDVFSTNVVHHYPFFLSLLAASPWGKD
RTVNEAGTGAGGEAMDVDGDGAKSRFGTVDVGLGAERGNKTCAHVLGFKFAHYCSQEVRD
AVPEDLYYMAALLVHEGYVRLSDLFSHLSPGEEGMTQLQGRYRKALTEKVSSARGNALSM
AAPLTDETSSALSKADADKAAAAAQQKEAPNQILGLTKAFLGLGRLDHALFILTRYPWLC
GAYPEVADAYIRLLKVSISPAYDEISSEDILECFVPLLKVLGVHLWRDAGLLQKLCRLTK
VGLKLANQAGDEPKRDAWLDVLRYHLLPALSLSPSNLGLVGEVWMVVRTLPYQDRFGLYG
QWKNDLYRIPELRAVQAETEKEAKGILKRISKDNVKLSGRNLAKASHSNPTVFFTVALNQ
VQAYDNLISPLVESAKYLSHWEYDIFSYNLVDALSNPEKERTKQDGTNISLWLKSLASFC
GTLYKRYAMMDCTPVLQYLVNQLKANNSKDLVIVTELIKKMSGIEPLANLDDAQVAALTG
GPHLRMEAMMSAQAASGSKERLYLRRCGMRLMSTLTGSRLAVPLLILIAQQRQAGIHLVP
ESEAHLKYLGNLYDSSQEVLLQFVEFLNDQLEPSEYTALVPPLRSLCRRFGIEPAMGFHI
SRPALNHSIKLVDAAEAEKRLRAELTASKNKAAAAKASTPEQAAAPPKAEDGIEGSVDAA
GDATTGAEKEPQQPASDDVVMEDAGKVDGGAANADATNPGPTSTAGIEDASESVKGPWHP
GLADAIETAKEMLPEEAQSGLGVHFYVTFWQLSPSSISVPTERYHQETMRLNQLARQAPE
DQRKRLADTVAQLNAELKEQMKAHEVTRKRLVAEKDHWFSDRAERGSVAAQMIQHCLFPR
ALLSATDAIFAGRFIKSMHGLGTRNFSSLTVYDKVFVEHVTATVFSSTENEARNYARFLH
TVLSDLSPWHKSADRYRKEVVGNRLPGFQMRWEDRHGGEEIPSAAMMSWEQFRQIYCKWQ
DMLQAAFRACLTSKEYMRIRNAIVVMTQISPFYPLLDSQGNEMLAIVEKLGAPEQRVDLK
TLALGLLATLRGRKKDWLPVHKARKVQNPPTSQPAASGKPQPQSQPTATASGPPSASTAK
KEPTPASASRDGTAPAPAAPPSSERGSSRSAPESNLALPTKPGLQRSPLSQEVVNGRNGQ
PATATTRQDQKPAPGAGGRSAADDRRTTATADKSTPSAPARASNGDRDRGRDSGTSTPVR
QAPAMRDAIESSRGGGRSSPLPAQERRNGAPAAAAATADAAGTGADRGAVAPTSGDVRSN
DGSTREIRGAASAARQAALDSMNPPRSPASTPSAQAARDRGAAAAAAGGRETTRGREPVG
VSDDRRTTSARSLDGAATNGNRSTQPSPRHSAAPSRNVSPSAGAGAARLGSSRAGSVEST
HSHPRSATGSARERERGDRDYRDRDRDRERGDATASVASTAAAAVTESRRERDRERDKER
DRERDRDRGDRRDRDRERDKSDHRPRDRERERERDRDKDREREHGRETRDRERERSGVGG
GSGPGSSSGKAGRDRDDRGEKRDRTERRRGAETAFTSTGDRDRDRDRDRERERDRADGRR
GGGSGAAAPEEAAVAPAPPVAPSTPLGPRDRGGRGRGGDAAEAGGKRKRGGDRDEGPDRR
DPPAASGAPQAGAGTPPEPLGESGNKRVKINRTANGDVGVSRVQGQGRMGGCVCVELGCR
TAATAAAAAAACSK
NT seq
5625 nt
NT seq
+upstream
nt +downstream
nt
atggcggccccttcacagcaggtcggcgacgccatgagcagctcgacactcgacggcttc
gtgtcaaaggagcaagcgtgcgagcggcttgagcagggcctgctggccgccgcaggcctc
atcatcaacgaggcctttttctcgaagcggacgatccagctgcgaacggcgcggctgttc
aagcagcaaaagttcaatctgctgcgagaggagaacgagggctactcgggcctcattgtc
gagatcacgcgcgggatagggccacccattgttgcggcgtacgccgacgagggcgcggcc
gagggagccgcaccgcccgcgcggccagactcgccagtgatggtggtggagcaggaatcg
ccgctggagcgcaaccggagggcggcgagggtgatgaacaacatccaggcgctcatcggc
tactttgacctcgatgccaaccgcgtcctcgacatcatgctcgacgtcttttcgaccaac
gtcgtccaccactaccccttcttcctcagcctcctcgcggcgtcgccgtggggcaaggat
cggacggtgaacgaggccggcacaggggcgggcggcgaggccatggacgtcgacggcgac
ggcgcaaagtctcgcttcggcaccgtcgacgttggcctgggcgccgagcggggcaacaag
acctgcgcccacgtcctcggcttcaagtttgcccactattgcagtcaggaggtccgggac
gccgtgcccgaggacctctactacatggcggcgctgctggtgcacgagggctacgtgcgg
ctgtcggacctcttttcccacctctcgccgggcgaggagggcatgacgcagctgcagggc
agataccgcaaggcgctcaccgaaaaggtctcgagcgcacggggcaacgcgctgtcgatg
gccgcgccgctgaccgacgagacgagctcggcgctgagcaaggccgacgccgacaaggcc
gcggccgcggcgcagcaaaaggaggcgcccaaccagatcctcggcctcaccaaggcgttc
ctcggcctcggcaggctcgaccacgccctcttcatccttacgcgctatccgtggctctgc
ggcgcgtacccagaggtggccgacgcctacatccgcctgctcaaggtctcgatctcgccc
gcctacgacgagatctcctccgaggacatcctcgagtgctttgtgccgctgctcaaggtg
ctcggcgtccacctgtggcgcgacgcgggcctgctgcagaagctgtgccggctgaccaag
gtgggcctcaagctggccaaccaggccggcgacgagcccaagcgcgacgcctggctcgac
gttctgcgctaccacctcctccccgcgctgtcgctctcgccgtcgaacctgggcctggtg
ggcgaggtgtggatggtggtgcgcacactgccgtaccaggaccgcttcggcctctacgga
cagtggaaaaacgacctctaccgcatccccgagctgcgcgccgtccaggccgagacggaa
aaggaggcaaagggcatcctgaagcgcatcagcaaggacaacgtcaagctgtccggccgc
aacctggccaaggcgtcgcactcgaaccccaccgtcttcttcaccgtcgccctcaaccag
gtccaggcctatgacaacctcatcagcccgctcgtcgagtcggccaagtacctctcgcac
tgggagtacgacatcttctcctacaacctggtcgacgccctgagcaacccggaaaaggag
cgcaccaagcaggacggcaccaacatcagcctgtggctcaagagcctggcgtcgttttgc
ggcaccctgtacaagcggtacgccatgatggactgcacgcccgtgctccagtacctcgtc
aaccagctcaaggccaacaactcaaaggacctcgtcatcgtcacggagctcatcaaaaag
atgtcgggcatcgagccgctggccaacctcgacgacgcccaggtggccgccctcaccggc
gggccccacctgcgcatggaggccatgatgtcggcgcaggccgccagcggaagcaaggag
cgcctctacctccggcgctgcggcatgcgcctcatgtcgacgctcaccggcagccggctg
gcggtgccgctgctgatcctcattgcgcagcagcgccaggcgggcatccacctcgtgccc
gagagcgaggcccacctcaagtacctcggtaatctgtacgactcgagccaggaggtgctg
ctccagtttgtcgagttcctcaacgaccagctcgagccgtcagagtacaccgcgttggtc
cctccgctgcgctccctctgccgccgatttggcatcgagcccgccatgggcttccacatc
tcgcgcccggctctcaaccacagcatcaagctcgtcgacgcagccgaggcggaaaagcgc
ctgcgcgccgagctgacggccagcaagaacaaggcggcagccgccaaggcctcgacgccg
gaacaggcggccgccccacccaaggccgaggatgggattgaggggtccgtggacgccgca
ggcgacgcaacgaccggcgccgaaaaggagccgcagcagccggctagcgacgacgtggtc
atggaagacgcaggcaaggtcgatggcggtgctgccaacgctgacgctaccaacccggga
cccacgtcaacggcaggcatcgaggacgcgagcgagagcgtcaaggggccctggcatccc
ggcctggccgacgcgatcgagacggccaaggagatgctgccggaagaggcccagagcggc
ctcggcgtccacttctacgtcaccttctggcagcttagcccgtcgagcatcagcgtgccg
acggagcgctaccaccaggagacgatgcggctcaaccagctggcgcggcaggctcccgag
gatcagcgcaagcgcctcgccgacactgtggcgcagctcaatgcagagctcaaggagcag
atgaaggcgcacgaggtgacgcgcaagcggctggtggcggaaaaggaccactggttctcg
gaccgcgccgagcgcggcagcgtcgccgcgcagatgatccagcactgcctcttcccgcgc
gccctcctctcggccacagacgccatcttcgccggccggttcatcaagtcgatgcacggc
ctcggcacccgcaacttttctagcctcaccgtgtacgacaaggtgtttgtcgagcacgtc
accgccaccgtcttctcgtcgaccgagaacgaggcgcgcaactacgcccgcttcctgcac
acggtgctctcggacctcagcccctggcacaagagcgcggaccgctaccgcaaggaggtg
gtgggcaaccggctgccgggcttccagatgcgctgggaggaccggcacggcggcgaagag
atcccgagcgccgccatgatgagctgggagcagttccgccagatctactgcaagtggcag
gacatgctccaggcggccttccgcgcttgcctcacctcgaaggagtacatgcggatccgc
aacgccatcgtcgtcatgacgcagatctcgcccttctacccgctcctcgactcgcagggc
aatgagatgctcgccatcgtcgagaagctcggcgccccggagcaacgggtcgacctcaag
acgctggcgctcggcctcctcgccacacttcgtgggcgtaagaaggactggttgcccgtc
cacaaggctcgcaaggtgcagaacccgccgacgagccagcccgcagcatctggcaagcct
cagcctcagtcccagcccacggcgacggcaagtgggccaccttctgcatccacggccaaa
aaggagccgacccctgcctcggcatctcgggatgggacggcacccgcaccagcagcgcca
ccgtcgtctgaacgtggaagttccagatctgcacccgagtccaacctcgccctaccgacc
aagcctgggctccagagaagtcctctcagtcaagaagtcgtcaacggcaggaacggacag
cctgcgacggcgacaaccaggcaggaccagaagccggctccgggggcaggtggacgcagc
gctgccgacgaccgaaggacgacggccacggccgacaagtcgacgccgtcagctccggca
agagcgtccaatggcgaccgcgatcgcggtcgcgactcgggcacatcgacgccggtgcgc
caggcacctgcaatgcgcgacgccatcgagagctcgcgcggaggaggtcgcagctcgccc
ctaccggcgcaagagcggcgcaatggcgctcccgccgccgccgccgccaccgccgatgca
gccggaacaggcgccgaccgtggtgccgtcgcgccgacgagtggtgacgtccgcagcaac
gacggatccactcgcgaaatccggggcgccgcctcagcggcacggcaggctgcgctcgac
agcatgaacccaccaaggagtcctgcctcgacgccaagcgcccaggcagcgcgcgaccgt
ggcgcggccgccgctgccgctggaggtcgagaaaccactcgagggcgtgaaccggtcggt
gtctcagacgatcgacgcaccacatccgctcgctcgctcgatggcgccgccaccaacggc
aatcgctcgacgcagccgtctccccgacactcggccgcgccctcgaggaacgtgtcgccg
agcgctggtgctggcgccgcacgtctaggctccagccgtgccggcagcgtcgagtccact
cactcgcatccccgctcagccactggctcagcgcgcgaacgggaacgtggtgatcgcgac
tatcgagaccgcgacagagacagggaacgcggcgatgccactgcctctgtcgcctctact
gctgccgctgctgtcacagagagtcgcagagagcgtgaccgcgagcgcgacaaggagcgc
gacagggaacgcgaccgcgaccgcggcgatcgtcgggatcgagaccgggagcgagacaag
tcggaccaccgccctcgtgaccgggagcgcgagcgcgagcgggaccgggacaaggatcga
gagcgagagcacggccgcgagactcgcgatcgagaacgagagaggtccggcgtaggaggt
ggcagcgggcccggcagcagtagcggcaaggccggccgagatcgcgacgatcgcggcgag
aagcgcgaccgcaccgagcgtcgccgtggcgccgagaccgctttcacttctaccggcgat
cgtgatcgcgaccgtgaccgcgaccgcgagcgggagagggaccgcgctgatggccgacgg
ggcgggggatccggcgccgctgctccagaagaggcagccgttgcccctgctcctcccgtc
gcgccttcgacacctcttgggccacgcgaccgcggcggacgcgggcgtggcggtgatgca
gccgaggctggcggcaagcgcaagcgtggcggggaccgggacgagggacccgaccggcgc
gatccgcccgctgcttctggggcaccgcaagctggtgccggtactccgccggaacccctg
ggcgagagcggcaacaagcgggtcaagatcaaccgtaccgccaacggagacgtcggcgtc
tctcgagtccaaggccagggccggatgggaggctgcgtctgcgtcgaactcggctgccgc
accgccgccacagcagcagcagcagcagcagcgtgctccaagtag
DBGET
integrated database retrieval system
