KEGG   Pseudozyma flocculosa: PFL1_04975
Entry
PFL1_04975        CDS       T03141                                 
Name
(RefSeq) hypothetical protein
  KO
K03143  transcription initiation factor TFIIH subunit 3
Organism
pfp  Pseudozyma flocculosa
Pathway
pfp03022  Basal transcription factors
pfp03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:pfp00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    PFL1_04975
  09124 Replication and repair
   03420 Nucleotide excision repair
    PFL1_04975
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pfp03021]
    PFL1_04975
   03400 DNA repair and recombination proteins [BR:pfp03400]
    PFL1_04975
Transcription machinery [BR:pfp03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     PFL1_04975
DNA repair and recombination proteins [BR:pfp03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     PFL1_04975
SSDB
Motif
Pfam: Tfb4
Other DBs
NCBI-GeneID: 19319075
NCBI-ProteinID: XP_007880696
UniProt: A0A061H3N4
LinkDB
Position
Unknown
AA seq 403 aa
MPSAQAKNTTDVANAGFSHLNAGRGRAALTTRIAPDFLVLIIDVNPIAWTSGSTRNGKQR
EAVHDSDFENALNAIIIFLNAHIAMQHENGLAIYAAGTGRAQLLYTSAPFASRSTTTSSE
AGSAKPDANTYQHFKHVDDKVVEGMKRMARDMRAQLEAASASSSSSSSSTPSSSTSAAAS
KMATTAIVSALAQALCHLNRLALASAANANDPASRFGSSAATTGDTGGGGSAGSTNATAA
PQAFRNRILILSVTPDASTQYIPMMNCIFAAQKKSILIDVCKVFGADTVFLQQAAHLTGG
TYFRIDEAATVEGGAASGLLQCLMSSYLPSRSIRDVMHLPMLDEVDFRAACFCHRRIVDV
GYVCSVCLSLFCEPRPVCLTCQSRYPTHTIERYRQEEALTTAS
NT seq 1212 nt   +upstreamnt  +downstreamnt
atgccttcagcgcaggccaagaacaccaccgacgtcgccaatgccggcttctcgcacctc
aatgcgggccggggcagggcggctctcacgacccgtattgcgcccgactttctcgtcctc
atcatcgacgtcaacccgatagcatggacgtccggaagcacgagaaacggcaagcagagg
gaggcggtgcacgactcggactttgagaatgcgctcaatgccatcatcatctttctcaac
gcccacattgcgatgcagcacgaaaatggcctcgccatctacgccgcaggcacagggaga
gcccagctgctgtataccagtgccccttttgcgagccggtcgacgacgacatcgtcagag
gcaggtagcgccaagcccgacgccaacacctaccagcactttaagcacgtcgacgacaag
gtggtcgagggcatgaagcggatggcccgcgacatgcgcgctcagctcgaagcggcttcg
gcctcgtcgtcgtcgtcatcgtcctcgacaccgtccagctcgacctcggcagcggcgtcc
aagatggcgacgacggccatcgtgagcgcgctggcccaggctctctgtcatctcaaccgg
ctggcgctagcgtcggcagccaacgcaaacgatccagcatcgcggttcggctcgtcggcg
gccacgactggggacacaggcggcggcggctctgccggctcgaccaatgccacggcggct
ccgcaggcgtttcgcaaccggatcctgatcctcagcgtcacgccggatgccagcacgcag
tacatcccgatgatgaactgcatctttgccgcgcagaagaagtcgatcctgattgacgtg
tgcaaggtgtttggcgccgacaccgtctttttgcagcaggcggcgcacctgacgggcggc
acctacttccgcatcgacgaggcggcgacggtcgagggcggtgcggcgagcgggctgctg
cagtgcctgatgtcgtcgtacctgccgtcgcgctcgatccgggatgtgatgcacctgccc
atgctcgacgaggtcgacttccgggcggcctgcttctgccaccggcgcatcgtcgacgtc
ggctacgtgtgttccgtctgcctgagcttgttctgcgagcccaggccagtgtgcttgacg
tgccagtcgcggtatccgacacacaccatcgagcggtaccggcaagaggaggccttgacg
acggcgtcgtga

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