KEGG   Pseudozyma flocculosa: PFL1_05201
Entry
PFL1_05201        CDS       T03141                                 
Name
(RefSeq) hypothetical protein
  KO
K03141  transcription initiation factor TFIIH subunit 1
Organism
pfp  Pseudozyma flocculosa
Pathway
pfp03022  Basal transcription factors
pfp03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:pfp00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    PFL1_05201
  09124 Replication and repair
   03420 Nucleotide excision repair
    PFL1_05201
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pfp03021]
    PFL1_05201
   03400 DNA repair and recombination proteins [BR:pfp03400]
    PFL1_05201
Transcription machinery [BR:pfp03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     PFL1_05201
DNA repair and recombination proteins [BR:pfp03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     PFL1_05201
SSDB
Motif
Pfam: BSD PH_TFIIH
Other DBs
NCBI-GeneID: 19319298
NCBI-ProteinID: XP_007880921
UniProt: A0A061H3W8
LinkDB
Position
Unknown
AA seq 701 aa
MATSSTAHLHAAVAFKQVAGTLAAHANGTLSWTPSTTSSSVAAFTINYVDIAGLQTSKQG
AEQTALMVALANGAQVAGKSKVLLIFNAEPQTALDNREAFKSELTTAIMNNRAAQQQPAA
SASASGSSTPLTAGFASSRPPSVPSSPAPAARRVATPDVASSSGLSSPGQSFAKRSDTAS
DPLMPLTDNKLRVSVLRSDKNLRNLHMDVVVIGGAMKDEDFWSHPQRQALIRAERARLEQ
RRGRNARLADPKPAHNEAGELKLNVSNELIADIFEQFPVVARAYEENVPSKLDQSAFWQR
YFQSKLYHRLRTSARSAASEHIVQDDPVFDKYLEDEDDQLEPRRLRNPHDRLLDLAATEE
DHQETGNTKDWTMRAGAERRTLPLMRRFNDHSQSLLDSALGEQEEAERRARRVVGGVGEE
YDANDPTARENVEAIKARYYREIEIDDLNESERTERVRLNVSELDGYPQSQDRNQSVANG
ADEAAGEGVGRKRKRANEDDGSIPRTIEEVRATVERFDADIKGWMPQLGDYKPRKGESEV
AMKVMLRNVRSRTTDRGVNDLKTLPATLQKTTTSIQASTTEFLRQLWSCLSPSSAPLGDA
AENKATNWKDVQASNLSSSSSAAAGVDAEGVAGDAAREREKEERLERARKMVSSLEKSLD
KMQNVQLEAEEEHGVDAARKVATALAPTRQAVEKALKIRIE
NT seq 2106 nt   +upstreamnt  +downstreamnt
atggccacctcttccactgcacacctgcatgcggccgtcgcattcaagcaggtggccggc
accttagccgcgcacgcaaacggcaccctctcctggaccccctcgaccacatcctcgagc
gtcgccgccttcaccatcaactacgtcgacatcgccggcctccagacatcgaagcagggc
gcagagcagaccgctctcatggtcgctttggcaaacggcgcccaggtcgcaggcaagtca
aaggtgctcctcatcttcaacgcagagccgcagaccgctctcgacaaccgcgaagccttc
aaaagcgagctcaccaccgccatcatgaacaacagggcagcacagcagcagccagccgcc
agcgccagcgccagcggctcctcgaccccgctcactgcgggcttcgccagctcgcgtcca
ccttcggtcccctcatcgcccgccccggctgccaggcgagtcgccactccggacgtcgcc
tccagctccggcttgagctcaccaggacagtctttcgccaagcgcagcgacacggcctca
gacccgctcatgcccctcacagacaataagctgcgcgtcagcgtcctccgttccgacaag
aacctgcgcaaccttcacatggacgtcgtcgttatcggcggcgccatgaaagacgaggat
ttttggtctcatccacagcgccaggcgctcatccgcgcagagcgcgcaaggctagagcag
cgccgaggccgcaacgcccgcctcgcagaccccaagcccgcgcacaacgaggcgggcgag
ctcaaactcaacgtctccaacgagctcatcgccgacatttttgagcagttccccgtcgtc
gcgcgcgcgtacgaggagaacgtgccatccaagctcgaccagagtgccttctggcagcgc
tacttccagtccaagctgtaccaccgcctccgcacgtcggcgcggtcagctgcatcggag
cacattgtccaggacgatcccgtctttgacaagtacctcgaggacgaggacgaccagctc
gagccgcgccgcctgcgcaacccgcacgaccgcttgctcgacctggcggcgaccgaagag
gaccaccaggagacgggcaacaccaaggactggaccatgcgtgccggcgccgagcgcagg
acgctgccgcttatgcgccgcttcaacgatcattcccaatcgctgctcgactcggccctg
ggcgagcaggaggaggccgagcgtcgcgcccgccgcgtcgtcggtggcgtgggcgaggag
tacgacgccaacgaccccaccgcgagagagaatgtcgaggcgatcaaagctcgctactac
cgcgagattgaaatcgacgatctcaacgagtccgaacggacggagcgagtgcggctcaac
gtgagcgagctcgacgggtatccgcagagccaggaccgcaaccagtcggtggccaatgga
gccgacgaggcggcgggtgaaggggtgggacggaagcgcaaacgggccaacgaggacgac
ggcagcatcccgcgcacgatcgaagaggtgcgcgccaccgtcgaacggttcgatgccgac
atcaagggatggatgccccagttgggcgactacaagccgcgcaagggcgagagcgaggtg
gcgatgaaggtgatgctgcgcaacgtccgcagccgcaccacggataggggcgtcaacgat
ctcaagacgttaccagcgacgctgcaaaagacgacaacatcgatccaggcgtcaacgacc
gagttcctccgacagctatggtcatgcctctctccgagctctgcacctctgggggacgcg
gcagagaacaaggcgaccaactggaaagacgtgcaggcttccaacctctcgtcctcctcc
tcggccgccgccggcgtcgatgctgaaggtgtagcgggagatgcggctagggagagggaa
aaggaggagaggctagagcgagcgcgcaagatggtctcgagtctggaaaagtcgctggac
aagatgcagaatgtccagctcgaggcggaggaggagcatggcgtcgatgcggcgagaaag
gtggctaccgcactcgcgcccacccgacaggctgttgagaaggcgctcaagatcaggatc
gagtga

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