KEGG   Pseudozyma flocculosa: PFL1_05290
Entry
PFL1_05290        CDS       T03141                                 
Name
(RefSeq) hypothetical protein
  KO
K14404  cleavage and polyadenylation specificity factor subunit 4
Organism
pfp  Pseudozyma flocculosa
Pathway
pfp03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:pfp00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    PFL1_05290
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pfp03021]
    PFL1_05290
   03019 Messenger RNA biogenesis [BR:pfp03019]
    PFL1_05290
Transcription machinery [BR:pfp03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     PFL1_05290
Messenger RNA biogenesis [BR:pfp03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     PFL1_05290
SSDB
Motif
Pfam: zf-CCCH zf_CCCH_4 Torus zf-CCHC zf-CCCH_2 zf-CCCH_9 zf-CCHC_3 zf-CCCH_4 DUF4485
Other DBs
NCBI-GeneID: 19319384
NCBI-ProteinID: XP_007881014
UniProt: A0A061H8X1
LinkDB
Position
Unknown
AA seq 353 aa
MAATYGFRPEYQSLLSASRPGSSTLSQPSDFIHTEFNFEPYIKAQLSLKLDNDAQLCPDF
LATRSCPRSTACPRRHVSPSPLNFLAPNSHLLRDPNKRTVCKHWLRGLCKKGEQCDYLHE
YDLRRIPECRFFATFGFCNSGDDCLYLHVDRKIKRRECQRYNRGFCPRGPDCPKKHVRRV
ACPWYLCGFCPLGPSCKMGHIKSTPPSAASRSSSPIQTHRPLTAAEAFGGGDRLGARDDG
GFDGPPGRRPRYGADAGASGPGGGGPPGSRSDQMGPRGGRPSGGGGGGGGGGGWKKDLSE
VLCFKCGEYGHFANTCPNPNRPGNRGGLERTTGGRERSTGGRGGAGGGRPGPY
NT seq 1062 nt   +upstreamnt  +downstreamnt
atggcagccacgtacggcttccggccagagtaccagtcgctgctgagcgccagccgcccg
ggctcgagcaccctctcgcagccgtcggacttcatccacaccgagttcaacttcgagccc
tacatcaaggcgcagctctcgctcaagctcgacaacgacgcccagctctgccccgacttt
ctcgccacccgctcctgcccgcgctccacggcgtgcccgcgccgccacgtctccccttcg
cccctcaacttcctcgcccccaactcgcacctcctccgcgacccaaacaagcgcaccgtg
tgcaagcactggctccgcggcctctgcaaaaagggcgaacagtgcgactacctccacgag
tacgacctacgccgcatccccgagtgccgcttctttgccacctttggcttctgcaacagc
ggcgacgactgcctctacctccacgtcgaccgcaaaatcaagcgcagagagtgccagcgc
tacaaccgcggcttctgcccgagaggccccgactgccccaagaagcacgttcgccgcgtc
gcctgcccgtggtacctctgcggattctgcccgctcggtccaagctgcaagatgggacac
atcaaatcgacacccccctcggcggcatcgcgctcctcgtcgcccatccagacgcaccga
ccgctgacggccgcagaggcctttggcggcggtgatcgactgggggcgcgcgacgacggc
ggcttcgacggcccgccggggcgcagaccgcgctacggcgccgacgccggtgcgtcgggt
cccggtggcggcggtccacctgggtcgaggtcggaccagatgggacccagaggcggtcga
ccctccggcggcggcggcggcggtggtggcggaggagggtggaagaaggatctcagcgaa
gtcctctgcttcaagtgcggggagtacggccactttgccaatacgtgtcccaacccgaac
cggccgggcaatcggggcggcctcgaacggacgacgggcgggcgcgaacgcagcacgggc
ggccgtggcggtgccggtggtggtcggcctggaccgtactag

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