Pseudozyma flocculosa: PFL1_05290
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Entry
PFL1_05290 CDS
T03141
Name
(RefSeq) hypothetical protein
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
pfp
Pseudozyma flocculosa
Pathway
pfp03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pfp00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
PFL1_05290
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pfp03021
]
PFL1_05290
03019 Messenger RNA biogenesis [BR:
pfp03019
]
PFL1_05290
Transcription machinery [BR:
pfp03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
PFL1_05290
Messenger RNA biogenesis [BR:
pfp03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
PFL1_05290
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-CCCH
zf_CCCH_4
Torus
zf-CCHC
zf-CCCH_2
zf-CCCH_9
zf-CCHC_3
zf-CCCH_4
DUF4485
Motif
Other DBs
NCBI-GeneID:
19319384
NCBI-ProteinID:
XP_007881014
UniProt:
A0A061H8X1
LinkDB
All DBs
Position
Unknown
AA seq
353 aa
AA seq
DB search
MAATYGFRPEYQSLLSASRPGSSTLSQPSDFIHTEFNFEPYIKAQLSLKLDNDAQLCPDF
LATRSCPRSTACPRRHVSPSPLNFLAPNSHLLRDPNKRTVCKHWLRGLCKKGEQCDYLHE
YDLRRIPECRFFATFGFCNSGDDCLYLHVDRKIKRRECQRYNRGFCPRGPDCPKKHVRRV
ACPWYLCGFCPLGPSCKMGHIKSTPPSAASRSSSPIQTHRPLTAAEAFGGGDRLGARDDG
GFDGPPGRRPRYGADAGASGPGGGGPPGSRSDQMGPRGGRPSGGGGGGGGGGGWKKDLSE
VLCFKCGEYGHFANTCPNPNRPGNRGGLERTTGGRERSTGGRGGAGGGRPGPY
NT seq
1062 nt
NT seq
+upstream
nt +downstream
nt
atggcagccacgtacggcttccggccagagtaccagtcgctgctgagcgccagccgcccg
ggctcgagcaccctctcgcagccgtcggacttcatccacaccgagttcaacttcgagccc
tacatcaaggcgcagctctcgctcaagctcgacaacgacgcccagctctgccccgacttt
ctcgccacccgctcctgcccgcgctccacggcgtgcccgcgccgccacgtctccccttcg
cccctcaacttcctcgcccccaactcgcacctcctccgcgacccaaacaagcgcaccgtg
tgcaagcactggctccgcggcctctgcaaaaagggcgaacagtgcgactacctccacgag
tacgacctacgccgcatccccgagtgccgcttctttgccacctttggcttctgcaacagc
ggcgacgactgcctctacctccacgtcgaccgcaaaatcaagcgcagagagtgccagcgc
tacaaccgcggcttctgcccgagaggccccgactgccccaagaagcacgttcgccgcgtc
gcctgcccgtggtacctctgcggattctgcccgctcggtccaagctgcaagatgggacac
atcaaatcgacacccccctcggcggcatcgcgctcctcgtcgcccatccagacgcaccga
ccgctgacggccgcagaggcctttggcggcggtgatcgactgggggcgcgcgacgacggc
ggcttcgacggcccgccggggcgcagaccgcgctacggcgccgacgccggtgcgtcgggt
cccggtggcggcggtccacctgggtcgaggtcggaccagatgggacccagaggcggtcga
ccctccggcggcggcggcggcggtggtggcggaggagggtggaagaaggatctcagcgaa
gtcctctgcttcaagtgcggggagtacggccactttgccaatacgtgtcccaacccgaac
cggccgggcaatcggggcggcctcgaacggacgacgggcgggcgcgaacgcagcacgggc
ggccgtggcggtgccggtggtggtcggcctggaccgtactag
DBGET
integrated database retrieval system