Pseudozyma flocculosa: PFL1_05421
Help
Entry
PFL1_05421 CDS
T03141
Name
(RefSeq) hypothetical protein
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
pfp
Pseudozyma flocculosa
Pathway
pfp03022
Basal transcription factors
pfp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pfp00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
PFL1_05421
09124 Replication and repair
03420 Nucleotide excision repair
PFL1_05421
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pfp03021
]
PFL1_05421
03400 DNA repair and recombination proteins [BR:
pfp03400
]
PFL1_05421
Transcription machinery [BR:
pfp03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
PFL1_05421
DNA repair and recombination proteins [BR:
pfp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
PFL1_05421
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ssl1
C1_4
VWA_2
IBR
VWA
DUF8626
DUF6999
Motif
Other DBs
NCBI-GeneID:
19319514
NCBI-ProteinID:
XP_007881144
LinkDB
All DBs
Position
Unknown
AA seq
544 aa
AA seq
DB search
MAPPRQNAADDGDADYDREEEDYLDDDDSGDDFRSAPALPRLGARGQGALATRNSLRSSA
AGAASTSKAAKDGGAPGKPKPKSKAKDAGYSWEATYKRSWDNVHEDESGSLESAVRQMIE
SNKRKRITRDVAPVQRGIIRHLVLLIDLSSSMLEKDLRPNRFDLTLQYAREFVQEYFDQN
PIGQLSVIATRNGIAERVAMMGGNTVDHVASLGQRRRLEPSGEPSLQNALEMARSSLAHL
PASNSREILAIFGSLTTCDPGNIHDTIRQLQRDHIRVSMVSLAAEVKIYRDVCTKTGGTF
SVALNEGHFRDCLFDLVPPPAVEGPGRGRGRGPEGSDGDGDAASQGIDLLQMAFPLRLPA
HSDPTLCACHSKVKGAGYLCPRCGCKVCDVPTDCPVCGITIVMSTHLARSYHHLFPVGNW
LAVPWEAVTPASNPNCFSCNLPFPPKPDPAQAPTHANGHANASASASASANANGSTATSS
SSQAAATVAAKAKAPNGARAVVGAVDESGLAPSSRYACSRCRTHFCLECDAFVHEQLHVC
PGCC
NT seq
1635 nt
NT seq
+upstream
nt +downstream
nt
atggcgccgccgagacagaatgccgccgacgacggcgacgcagactacgaccgagaagag
gaagactacctcgacgacgacgacagcggcgacgatttccgatccgcacctgccctacca
cgcctcggcgcccgtggacaaggcgctctcgctacccgcaacagccttcgctccagcgct
gccggtgctgcttccacgtcaaaggcagccaaggacggtggtgcaccgggcaagcccaag
cccaagtccaaggccaaggacgccggctacagctgggaggccacctacaagcgctcctgg
gacaatgtccacgaagacgagagcggcagcctcgagagcgcggtgcgccagatgatcgag
agcaacaagcgcaagcgcatcacccgcgacgtcgcccccgtccagcgcggcatcatccgc
cacctcgtcctcctcatcgacctcagctccagcatgctcgaaaaggacctccgccccaac
cgcttcgacctcaccctccagtacgcccgcgagtttgtccaggagtactttgaccagaac
cccatcggccagctcagcgtcattgccacgcgcaacggcatcgccgagcgcgtcgccatg
atgggcggcaacaccgtcgaccacgtcgcctcgctcggacagcggcgcaggctcgagccc
agcggcgagccctcgctgcagaatgccctcgagatggcgcgctccagcctggctcacctg
cccgccagcaactcgcgcgagatcctcgccatctttggctccctcaccacctgcgacccg
ggcaacatccacgacaccatccgccagctccagcgcgaccacatccgcgtctcgatggtc
tcgctcgccgcagaggtcaaaatctaccgcgacgtctgcacaaagacaggaggcaccttt
agcgtcgccctcaacgagggccactttcgcgactgcctctttgatctcgtgcccccgccc
gcagtcgagggtccaggccgcgggcgaggccggggcccagagggaagcgacggcgacggc
gacgccgcgtcgcagggcatcgacctgctgcagatggcctttccgctgcgcctgcccgcc
cactcggaccctacgctgtgcgcgtgccactccaaggtcaagggcgccggttacctgtgc
ccgcgctgcgggtgcaaggtgtgcgacgtgcccaccgactgccccgtgtgcggcatcacg
attgtcatgagcacccacctcgcccgctcctaccaccatctcttccccgtcggcaactgg
ctcgccgtgccctgggaggccgtcacgcccgcgtcgaacccgaactgcttttcgtgcaac
ctcccctttccccccaagcccgacccggcccaggctccaacccacgccaatggccatgcc
aacgccagcgccagcgccagcgccagcgccaacgccaacggctccacagcaacatcgtcg
tcgtcgcaggctgccgctacggtcgccgccaaagccaaggcgcccaacggtgcgagggcc
gtggtgggcgccgtcgacgagagcggtctggcgccgtcgtcgaggtacgcgtgctcgagg
tgcaggacccacttttgcctcgagtgcgacgcctttgtgcacgagcagctccacgtctgc
cccggctgctgctga
DBGET
integrated database retrieval system
