Pseudozyma flocculosa: PFL1_06296
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Entry
PFL1_06296 CDS
T03141
Name
(RefSeq) hypothetical protein
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
pfp
Pseudozyma flocculosa
Pathway
pfp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pfp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PFL1_06296
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pfp03019
]
PFL1_06296
Enzymes [BR:
pfp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
PFL1_06296
Messenger RNA biogenesis [BR:
pfp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
PFL1_06296
mRNA degradation factors
3'-5' decay
Ski complex
PFL1_06296
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
Ski2_N
DEAD
MTR4_beta-barrel
MTR4-like_stalk
ResIII
Helicase_C
DEXQc_Suv3
DUF3516
AAA_22
Motif
Other DBs
NCBI-GeneID:
19320374
NCBI-ProteinID:
XP_007882028
UniProt:
A0A061H1D0
LinkDB
All DBs
Position
Unknown
AA seq
1198 aa
AA seq
DB search
MEQPLFAHTGAYNDAVAALRRPGAADPVDPASLLSRDATTTIVDRFLAPLSRFTPSDLAR
QQVHWPRTPHTQSMLWAEPSVSLTSLDFVRAGLEGRIVGYKELSHPRDPLLDPRNSTSLA
RKPATATNFVRGKSAFVPFAPGGLEDEVIAPHDPQEADERIETEVQQMEDALRSGRGLRD
HAPGLSRPYEDPEASAADDGDDDDDVEIGEVDAITGMTPLPIYRPSNEAGPSRLSSALSS
SSSQQQQPGAHGSSAAGREQDAELDELLPMERPRPLLQKRAAKVDAKRDWAHVVDVNQSL
TNFKELVPEMAHSFPFELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIALAQKHM
TRCIYTSPIKALSNQKYRDFKQTFGAQNVGILTGDVQINPEAPCLIMTTEILRSMLYRGA
DLIRDVEFVIFDEVHYVNDTERGVVWEEVIILCPQHINMILLSATVPNTKEFADWVGRTK
KKDIYVISTPKRPVPLEHFLYAGKEIFKIVDAQAQFLGGGLKDAGEALKRKQEKEREAAG
LPPPDLLPCVVFVFSKKRCEENAGSMPNTDLCNAREKNEVFIVIEKSLTRLKGSDKELPQ
IKRMRDLLGRGIGVHHGGLLPIVKEIVEILFQRGLVKVLFATETFAMGVNMPARSVVFSG
IRKHDGQGFRDLLAGEYTQMSGRAGRRGLDPTGVVIINASDGLPESATLHKMLLGQPTKL
QSQFRLTYNMILNLLRVETLKVEEMIKRSFSENAAQKMLPDQQRKAEEVERKLSKLPQVQ
PKELAEELSVYYDLCNAIDSSHQGMCELALDNPQGSKNFAAGRVVLLRDSHFDHHVGVIV
RQVASREFLVLAAVSKETKRGESDSVGTVAPLWPPRVERCEAEETVYDLREVPLSSIIDV
PLIMAHRISAMTKAVEALLPLRDAYAALDTGAVPPEVDWSKIRRLDFQEALRSRDSYVGR
LKPHFGLVDDDAFLKHYAQTHTRKQLEAELSQLLLKQSNQNLELLPDYHQRIEVLKALRF
IEPTSESVLLKGRVACEINSANELVLTELILENALVRYTPEETVALLSIFLFQEKTSVVP
ELSERLSEGYATIVEIADRVNAVQALNQLNFEDFANPQKLGLVQVVYEWARGTAFDKITD
LTDVQEGTIVRVITRLDETCREVRDAARVIGDADLFTKMETCQALIRRDIVFAASLYF
NT seq
3597 nt
NT seq
+upstream
nt +downstream
nt
atggagcagcccctgtttgcccacacgggcgcatacaacgatgccgtcgccgcgctccga
cgcccgggtgcagccgaccccgtcgacccggccagcctgctcagccgcgatgccaccacc
accatcgtcgaccgcttcctcgcccccctcagccgcttcacgccctcggacctcgccagg
cagcaggtccactggccacgcacaccccacacccagtccatgctctgggccgaaccctcc
gtcagcctcacctcgctcgactttgtccgcgcaggcctcgagggccgcatcgtcggctac
aaggagctatcccacccgcgcgaccccctcctcgacccgagaaactcgacctcgctcgcc
cgcaagcccgccaccgccaccaactttgtcaggggaaagagcgccttcgtcccctttgcc
ccgggcggtctcgaggatgaggtcatcgcaccccacgacccgcaagaggcagacgagcgc
atcgagacagaggtgcagcagatggaggacgccctgcgctcggggagggggttgcgcgac
cacgccccaggcctcagccgcccctacgaggaccccgaggcgtcggcggccgacgatggc
gacgacgacgacgacgtcgagatcggcgaggtcgatgccatcaccggcatgacacccctt
cccatttaccgcccgtccaacgaggccggaccgtctcgcctctcgtccgcactctcgtcg
tcgtcgtcgcagcagcagcagcctggtgcgcacggctcgtccgctgctggccgcgagcag
gacgccgagctcgatgagctgctgcccatggaacgcccgcgccccctcctccagaagcgc
gccgcaaaggtcgacgccaagcgcgactgggcccacgtcgtcgacgtcaaccagtcgctc
accaacttcaaggagctcgtccccgaaatggcccactcgttcccctttgagcttgacacg
ttccagaaggaggccgtctaccacctcgagcagggcgacagcgtctttgtcgccgcccac
acctcggcaggaaagacggtcgtggccgagtacgccatcgcgctggcgcagaagcacatg
acgcgctgcatctacacctcgcccatcaaggcgctctcgaaccaaaagtaccgcgacttt
aagcagacgtttggcgcgcagaacgtcggcatcctcacgggcgacgtccagatcaacccc
gaggcgccgtgcctgatcatgacgaccgagatcctgcgcagcatgctctaccgcggcgcc
gacctcatccgcgacgtcgaattcgtcatcttcgacgaggtgcactacgtcaacgacacc
gagcgcggcgtcgtgtgggaggaggtcatcatcctctgcccgcagcacatcaacatgatc
ctcctctcggccaccgtgcccaacaccaaggagttcgccgactgggtcgggcgcaccaag
aaaaaggacatctacgtcatcagcacgcccaagcgccccgtcccgctcgagcacttcctg
tacgccggaaaggagattttcaagatcgtcgatgcccaggcccagttcctcggtggcggc
ctcaaggacgccggagaggcgctcaagcgcaagcaggaaaaggagagggaggccgcgggc
cttccgccgcccgatctcctgccctgcgtcgtctttgtcttttccaaaaagagatgcgag
gagaacgccggcagcatgcccaacaccgacctctgcaacgccagggagaaaaacgaggtc
tttatcgtcatcgaaaagagcctcaccaggctcaaaggatcagacaaggagcttcctcag
atcaagaggatgcgggacctgctgggcagaggcatcggcgtgcaccacggaggcctgctg
ccgatcgtcaaagagatcgtcgagatcctcttccagcgcggactcgtcaaggtcctcttc
gcgacagagacgttcgccatgggcgtcaatatgcccgctcggtccgtcgtattctcgggg
atccgcaagcacgacggccaagggttcagggatctgctggccggcgagtacacccaaatg
tcgggtcgagccggacgacgaggtctcgacccgaccggggtggtcatcatcaacgcatct
gacgggcttcccgagagcgcgacgctgcacaagatgctgctggggcagccgaccaagctg
cagtcgcagttccgcctgacgtacaacatgatcctcaacctgctgcgcgtcgagacgctc
aaggtcgaagagatgatcaagcgctccttttccgaaaacgccgcacagaagatgctgccc
gaccagcagagaaaggccgaagaggtggagaggaagctgtcgaagctgccgcaggtgcag
ccaaaggagctggccgaggagctgagcgtctactacgacctgtgcaacgccatcgacagc
tcgcaccagggcatgtgcgagctcgccctcgacaacccgcagggaagcaagaactttgcc
gccggccgcgtcgtgctgttgcgagacagtcactttgaccaccacgtcggcgtcatcgtg
cgccaggtggcgtcgcgcgagttcctcgtcctcgccgccgtgtccaaggagacgaagcgg
ggcgaatccgattccgtcggcacggttgcgccgctctggccgccccgcgtcgagcgttgc
gaggccgaggagacggtctacgacctgcgcgaggtgccgctgtcgagcatcattgacgtg
ccgctgattatggcgcaccgcatctcggccatgaccaaggccgtcgaggcgctgctgccc
ctgcgcgacgcctacgccgccctcgacacgggcgcggtgccgcccgaagtcgactggtcc
aagatccggcgtctcgacttccaggaggcgctgcggtcgcgcgacagctacgtcggtcgg
ctgaagccccactttggactcgtcgacgacgatgcgttcctcaagcattatgcgcagacg
cacacgcgcaagcagctcgaggcggagctgagccagctgctgctcaagcagtcgaaccag
aacctcgagctgctgccagactaccaccagcgcatcgaggtgctcaaggcgctgcgcttc
atcgagcccacgtccgagagcgtgctgctcaaggggcgcgtggcgtgcgaaatcaactcg
gcaaacgagctcgtcctcaccgaactcatcctcgaaaacgccctggtccgctacacaccc
gaggaaaccgtggcgctcctcagcatcttcctgtttcaggaaaagacgtcggtcgtcccc
gaactgtccgagaggttgtcagagggctacgcaaccattgtcgaaatcgccgaccgagtc
aatgcagtgcaggcgctcaaccagctcaactttgaagatttcgccaacccgcagaaactc
ggactggtccaagtcgtctacgaatgggcgcgtggaaccgcatttgacaagatcacggac
ctcaccgacgtccaggaaggcaccattgtgcgcgtcattacccggctcgacgagacgtgc
agagaggtgcgcgacgccgcgcgcgtcattggcgacgccgacctcttcaccaagatggaa
acctgccaggccctcattcgtcgcgacatcgtctttgccgcaagcctctacttctga
DBGET
integrated database retrieval system
