Pseudozyma flocculosa: PFL1_06902
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Entry
PFL1_06902 CDS
T03141
Name
(RefSeq) hypothetical protein
KO
K08737
DNA mismatch repair protein MSH6
Organism
pfp
Pseudozyma flocculosa
Pathway
pfp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pfp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
PFL1_06902
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pfp03400
]
PFL1_06902
DNA repair and recombination proteins [BR:
pfp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
PFL1_06902
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
Acetyltransf_13
zf-C2H2_3
MutS_II
MutS_IV
Acetyltransf_7
Acetyltransf_1
Motif
Other DBs
NCBI-GeneID:
19320969
NCBI-ProteinID:
XP_007881358
UniProt:
A0A061H3S0
LinkDB
All DBs
Position
Unknown
AA seq
1707 aa
AA seq
DB search
MAPSTSKSPARASGGGGKQSTLLGFFGKAAATTPAKPSPKSTASGSAATPSRTPARPASA
RPTPNGSSSSVSSSSSTSTSTLSSLGSVDQRAATAAAAATTPSASKKRAAAGGPASSTRT
AAVAATKPLSSRLTPPASSDPDGMDIDEDDEDLMPVRRRSAAKRTISYAESDDEAGGGGG
ETDSEADEDGGSFSPSASKKRRSSGGRTLKRSRTARDDDNFIVSDNDVEEEEEEDDDDER
ALAATDDDSEDEAPLSKKAPSRAKAKAAHADTSPRPSSLGGFRMGSGPSSRPSPSSSSGR
LDQPGRPALGSRPTPPGGSSLSHLTKAERRVIEEKRKRAENEQAYSFLVDLRDKDGKRPG
EPDYDPRTVHIPASAWKDFTPFEVQFWKIKQNHFDTVLFFQKGKFYELYEDDALIGHREF
DLKLTDRVKMKMVGVPESSFDMFAAKFLALGYKVGRVDQTETAVAKGMRVGEKSRGGGGE
IVNRELRHVLTSGTIVDASALPDDLNSYCVSIKEVERAASAGADGGPRFGVCTLDASTAE
FNLSEFDDDASRTRLETLLRSLRLKEVLHEKGGLSPATARVLRNTVPAGCQTTMLKPGSD
RNFNIFDPLRQDRCMVLDAQSLTHLNVLQNDQGTDVGTLHRLLNRCATPFGKRLFKIWMV
APLADIDAIRARQDAVDDFLGCPAFEEAFDAFARQLPDIERIIPRIYAGKCRPKDFTRVL
TAFGHFRESVERLRALAESFAGEGGGRVAALLASIPDVTALAGELRSRFQLADDGSFTPR
RGVFAPYDEAEAALLAIEAQLEDELQACRRLLKLNAARCGWKHLGTKDIYQIEVPATTKV
PASWVKLSGTKDRHRFYSPEVRDLVQELKEARETRLAALKQFHAALFAEFVAESARYVEA
VKAVAEVDCLLSLAKASYAIGEPTCRPELVEHDTALVEFDELRHPCIAEGVDFIPNDIRL
GGDSDEVVILTGGNMAGKSTTARTTATAVIIAQLGCRVPALRARISPVDRIASRMGANDQ
IFRNNSTFMVEMLEASRIVRECTPRSLVVMDELGRGTSTFDGQAIAFAVLHHLVSRTRCL
SFFLTHYTSLAYDFQGYPRVSNKHLQVLVDDDRREVVFTYRLVDGVAESSYGTQVAALAG
VPHEICDRAAAVSKQFLESTKEHLARREQSRIPLATLSDFTHLVRLADDPAAANXXXXXX
XAASQLAVIRAQVKSLASAAASSAPPGQHGERGKAAALAARPDVALIPSAMPVSVFGQHE
RKTPAIGKTRAATTYAGRARRMRSDELPSDDGPASLPSTPTKRMRRSVDVATASSFGPID
TEGDNDGDGHGDDGDVVRRSLSSPVTSRSTATTSLLFGGARSRRHQAAAASATAAAAKRS
EQLILDLGQRIRVVCNECGMQYDTSSPEDGTLHAKYHDRTIKGVDWTSKCLLAAGREVAS
FRISDPKTKPSVLRPSGSASAQGRGTGADAGDERERPGPRLQERTPGDEVRILCSKLGQV
KEAVATRKLTELMASVDEALGASTLPDSTLKACKLFVAVKAGRGVGAALVGRVALGTARR
VVGGGAGGDVDQDNDNDNDNDKENRAGVAAPRATYQVLHDGGEAIFVSEPLSASATPPIG
VHRIHVIARFRRSGLASRLLDAAADHSVYGLNLARLEQMYGGRAGTVAFSQPTDAGRKLA
ERWIRSGGGGGEGAAKKQDGRLVVYEG
NT seq
5124 nt
NT seq
+upstream
nt +downstream
nt
atggccccctcgacgtccaagtcgcctgcccgagccagcggcggcggcggcaagcagtcg
acgctgctgggcttcttcggcaaggccgctgcaaccacgccggccaagccgagccccaag
agcaccgcctccggatcggccgcgacgccaagccgcacgccggcccgtcccgcgtcggct
cgcccgacgcccaacggctccagcagcagcgtctcctcgagcagcagcaccagcaccagc
accctcagcagcctgggcagcgtcgaccagcgcgctgccaccgctgctgctgccgccacg
acgccttccgcctcgaagaagcgcgctgcagcgggcgggcccgccagttcaacacggacc
gccgcagtcgccgcaaccaagccactttcctcccgcctcacgccaccggccagcagcgat
cccgacggcatggacatcgacgaggacgacgaggacctcatgcccgtccgcaggagaagc
gcggcgaagcgcaccatctcgtacgccgagtctgacgacgaggccggtggcggcggcggc
gagactgacagcgaggccgacgaggacggcggctccttttcgccgtcggccagcaagaag
cggcgctccagcggcggtcggaccctcaagcgttcgcgcaccgctcgcgacgacgacaac
tttatcgtcagcgacaacgacgtcgaggaggaggaggaggaggacgacgacgacgagcgc
gctctcgccgccaccgacgacgacagcgaggacgaggcgccgctctcgaaaaaggcgccc
tcgcgcgccaaggcgaaggcggcccacgccgacacgtcgccgcggccctcgagcctcgga
ggcttccgcatgggcagcggcccgtcgtcgaggccgtcgccgtcgtcgtcgtcgggccgc
ctcgatcagccagggcgaccggcccttggcagccggccgacgccgccgggcgggtcgtcg
ctgtcgcacctcaccaaggccgagcgccgcgtcatcgaggagaagcgcaagcgggccgaa
aacgagcaggcctacagcttcctcgtcgacctgcgcgacaaggacggcaagcggcccggc
gagcccgactacgacccgcgcaccgtccacatccccgcctcggcctggaaggacttcacg
ccgttcgaggtgcagttctggaagatcaagcagaaccactttgacacggtcctcttcttc
caaaagggcaagttctacgagctctacgaggacgacgcgctcatcggccaccgcgagttt
gacctcaagctgacggaccgagtcaaaatgaagatggtcggcgtgcccgagtcgtcgttc
gacatgtttgcggccaagttcctggcgctcggctacaaggtgggccgcgtcgaccagacc
gagacggccgtggccaagggcatgcgcgtcggcgaaaagtcgcgcggcggcggcggagag
attgtcaaccgcgagctgcgccacgtcctcaccagcggcaccattgtcgacgcctcggcg
ctgcccgacgacctcaacagctactgcgtctcgatcaaggaggtcgagcgggcggcctcg
gccggcgccgacggcggcccgcgcttcggcgtctgcacgctcgacgcctcgacggccgag
tttaacctgtccgagtttgacgacgacgcgtcgcgcacccgcctcgagacgctgctgcgc
tcgctccgcctcaaggaggtcctgcacgaaaagggcggcctcagcccggcgacggcgcgc
gtgctgcgcaacacggtgcccgccggctgccagacgacgatgctcaagccgggctccgac
cgcaacttcaacatctttgatccgctgcgccaggaccgctgcatggtgctcgacgcccag
tcgctgacccacctcaacgtgctccagaacgaccagggcaccgacgtcggcacgctccac
cgcctcctcaaccgctgcgccacgccgtttggcaagcgcctcttcaagatctggatggtg
gcgccgctcgccgacatcgacgccatccgcgcgcgccaggacgccgtcgacgacttcctc
ggctgccccgccttcgaggaggcctttgacgcgttcgccaggcagctgccggacatcgag
cgcatcatcccgcgcatctacgccggcaagtgcaggccgaaggacttcacccgcgtgctg
acggcgtttggccacttccgcgagagcgtcgagcggctgcgcgcgctggccgagtcgttt
gccggcgagggcggcggccgggtggcggcgctgctggcgtcgatcccggacgtgacggcg
ctggccggcgagctgcgcagccgcttccagctggccgacgacggctcctttacgccgcgg
cgcggcgtgtttgcgccctacgacgaggccgaggcggcgctgctggccatcgaggcgcag
ctcgaagacgagctgcaggcgtgccgccgcctgctcaagctcaacgcggcgcgctgcggc
tggaagcacctcggcaccaaggacatctaccagatcgaggtgcccgccacgaccaaggtg
cccgccagctgggtcaagctcagcggcaccaaggaccgccaccgcttctactcgcccgag
gtgcgcgacctggtgcaggagctcaaggaggcgcgcgagacgcggctggccgcgctcaag
cagttccacgccgccctctttgccgagtttgtcgcggagagcgcgcgctacgtcgaggcc
gtcaaggccgtcgccgaggtcgactgcctgctgagcctggccaaggcgtcgtacgccatc
ggcgagcccacgtgccgcccagagctcgtcgagcacgacacggccctcgtcgagttcgac
gagctgcgccacccgtgcatcgccgagggcgtcgactttatccccaacgacatccggctc
ggcggcgacagcgacgaggtcgtcatcctcaccggcggcaacatggccggcaagagcacg
acggcgcgcaccacggcgacggccgtcatcatcgcccagctgggctgccgcgtgccggcg
ctgcgggcgcgcatctcgcccgtcgaccgcatcgcgtcgcgcatgggcgccaacgaccag
atcttccgcaacaacagcacctttatggtcgagatgctcgaggcgtcgcgcatcgtgcgc
gagtgcacgccgcgctcgctcgtcgtcatggacgagctgggccgcggcacctcgaccttc
gacggccaggccatcgcctttgccgtgctccaccacctcgtcagccgcacccgctgcctc
agcttcttcctcacccattatacgagcctcgcctacgacttccagggctacccgcgcgtc
agcaacaagcaccttcaggtcctcgtcgacgacgaccggcgcgaggtggtattcacttac
cggctcgtcgacggcgtggccgagtcgtcgtacggcacccaggtggcggcgctggccggc
gttccccacgagatctgcgaccgggcggcggccgtgtcaaagcagttcctcgagtcgacc
aaggagcacctggcgcgccgcgagcagagccgcatcccgctcgccacgctcagcgacttc
acccacctcgtccggctcgccgacgacccggccgccgccaacnnnnnnnnnnnnnnnnnn
nnggcggcctcgcagctcgccgtgatccgcgcgcaggtcaagagccttgcgtcggccgcg
gcgtcgagcgcgccgccgggacagcacggggagaggggcaaggctgctgcgctggctgct
agacccgacgtcgccttgattccctcggctatgcctgtgtcggtgtttggccagcacgaa
cgcaagacgccggccatcggcaagacacgtgcggccaccacgtacgctggacgggcgcgg
cggatgcggagcgacgagctgccgtcggacgacgggccggcctcgttgccttcgacgccg
accaagcggatgcggcgctcggtcgacgttgcgacggcctcgagctttgggccgatcgac
acggaaggcgacaatgacggcgacggccacggcgacgacggcgatgtggtgcgtcgctcg
ctcagcagccccgtcacgtcgcgttccacggcgacgacgtcgctcctctttggcggtgcc
aggtcgcggcgccaccaggcggcggcggcgagcgcgacggctgcggcggccaagcggtcc
gagcagctcatcctcgacctgggccagcggatccgcgtcgtgtgcaacgagtgcggcatg
cagtacgacacgtcgtcgcccgaggacggcacgctgcacgccaagtaccacgaccggacc
atcaagggcgtcgactggacctccaaatgcctgctggccgcgggcagggaggtggccagc
ttccgcatcagcgaccccaagaccaagccgtcggtgctgcgcccgagcggcagcgcgagc
gcccagggccgaggcacaggagcggacgccggcgacgagcgcgagcgcccagggccgagg
ctacaggagcggacgccgggcgacgaggtgcggatcctgtgctcgaagctgggccaggtc
aaggaggcggtggcgacgcgcaagctgaccgagctgatggcctcggtcgacgaggcgctg
ggcgcatcgacgctgccggactcgacgctcaaggcgtgcaagctgtttgtcgccgtcaag
gcggggcggggcgtcggtgccgccctcgtgggccgcgtcgccctcggcaccgcacgccgg
gtggtcggcggtggcgcgggcggcgacgtcgaccaagacaacgacaacgacaacgacaac
gacaaggagaaccgggccggggtcgcggcgccgcgggccacctaccaggtgctgcacgac
ggcggtgaggccatctttgtctctgagccgctctcggcctcggcgacgccgccgatcggg
gtgcaccggatccacgtcatcgcccgcttccgccgcagcgggctggccagccggctgctg
gatgcggcggccgaccacagcgtctacggcctcaacctggcgcgcctcgagcagatgtac
ggcggccgcgcgggcaccgtggccttcagccagcccaccgacgccggtcgcaagctggca
gagcggtggatccgcagcggtggtggcggcggcgagggggcggcgaagaagcaggacggc
cgactggtcgtctatgagggatga
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