Pragia fontium: QQ39_02520
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Entry
QQ39_02520 CDS
T03952
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pfq
Pragia fontium
Pathway
pfq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pfq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QQ39_02520
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pfq03019
]
QQ39_02520
03009 Ribosome biogenesis [BR:
pfq03009
]
QQ39_02520
Enzymes [BR:
pfq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
QQ39_02520
Messenger RNA biogenesis [BR:
pfq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
QQ39_02520
Ribosome biogenesis [BR:
pfq03009
]
Prokaryotic type
rRNA helicases
QQ39_02520
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AKJ41095
LinkDB
All DBs
Position
571462..573390
Genome browser
AA seq
642 aa
AA seq
DB search
MSEIETSFADLGLSAPLLKALTDMGYEKPSPIQSACIPHLLGGRDVLGMAQTGSGKTAAF
ALPFLNNIQADMACPQVLVLAPTRELAVQVAEACTEYAKHMSGVRVVALYGGQRYDVQLR
ALRQGPQIVVGTPGRLLDHLKRGTLDLSKLKGLVLDEADEMLRMGFIEDVETIMAQIPAE
HQTALFSATMPEAIRRITRRFMRDPQEVRIQSNVVTRPDISQSYWTVYGMRKNEALVRFL
EAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKNGRLDILI
ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI
ERTMKISIPEVDLPSGDLLSKRRLEKFATRVSQQLESSDLDQYRALLAKLQPAEEQDIET
LAAALLKMAQGERPLILPPDAPADRRPRREPRDRDDRSNDRFGRRERDGRNDRGGDRDAA
PRRERREVGEMDMYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLYATHSTIELPK
GMPSDLLQHFTKTRVLNKPLNMQFVGDAPASEPRRGGGRRDGGGAGAGGGDRRPSSNGDR
RSFGGGAGRGDRNGPSRDGQSRGPRRDGGNSAPRRRPTSGNE
NT seq
1929 nt
NT seq
+upstream
nt +downstream
nt
atgtctgagatagaaacctcttttgctgatttaggcttatcagcacctttattaaaagca
ctgaccgatatgggttatgaaaaaccatccccgattcagtcggcttgtattccccacctg
ctgggcggtcgcgatgtattaggcatggcgcaaaccggtagcggtaaaacagcggcattc
gcattgccgttccttaacaatattcaagctgatatggcctgcccgcaggttttagtatta
gcaccaacccgtgaattagccgttcaggtagcagaagcctgcaccgaatatgctaaacac
atgtcaggcgtgcgcgtcgtggccctttatggtggccagcgttatgacgttcaattacgt
gctttgcgtcaaggaccacaaattgtcgtgggtaccccaggccgcctgttagaccacctg
aagcgtggaaccttagacctgtctaaattgaaaggtctggttctggatgaagccgacgaa
atgttacgtatgggcttcattgaagatgttgaaacgattatggcgcagattccggctgaa
catcagaccgcgctattctctgcgaccatgcctgaagcgatccgtcgtattacgcgtcgc
tttatgcgcgatcctcaagaagttcgtatccagtctaacgtggtgaccagacctgacatt
agtcagagttactggaccgtttacggtatgcgtaagaatgaggcgctggttcgtttcctg
gaagcggaagattttgacgctgcgatcattttcgtgcgtaccaagaatgccacgttagaa
gttgctgaagctttagagcgtagcggctataacagtgcggcattgaatggtgatatgaac
caagcgctgcgtgagcaaacgctggaacgactgaagaatggtcgtctggatatcctgatc
gcaactgacgttgccgctcgcggcttggacgttgagcgcatcagcttagtggttaactac
gatattccgatggattcagaatcctacgtgcaccgtattggccgtactggccgtgcaggt
cgtgcaggacgtgcgctgttattcgttgagaaccgtgagcgtcgcttactgcgtaatatc
gaacgcacgatgaagatctccattcctgaagtggacctgccatctggcgatctgttaagc
aagcgtcgtttagagaagtttgccacgcgtgtgagtcagcagttagagagcagcgatctg
gatcagtatcgtgcgctgctggctaaactacagccagctgaagagcaggatatcgaaaca
ttggcagcggctctgctgaaaatggcacagggcgaacgtccattgattctgccaccggat
gcaccagccgatcgtcgtccgcgtcgtgaacctcgtgaccgtgacgatcgtagtaacgat
cgctttggtcgtcgtgagcgtgatggacgtaatgatcgcggcggtgaccgtgatgcagca
cctcgtcgcgaacgccgtgaggtgggtgaaatggatatgtaccgcattgaagttggccgt
gatgatggtgttgaagtgcgtcatattgttggtgctattgccaatgaaggtgatatcagc
agccgttatatcggtaacatcaaattgtatgctactcactcaacgattgagctgccaaaa
ggcatgccttccgatctgttgcagcactttaccaagactcgtgtacttaacaagccgttg
aatatgcagtttgttggtgatgcaccggcaagtgaaccacgccgtggcggtggtcgtcgt
gatggcggcggtgctggtgctggtggtggtgatcgtcgtccatcttcgaatggcgatcgt
cgttcattcggtggcggagcaggtcgtggcgatcgtaatggcccaagccgtgatggtcag
tcccgcggcccacgtcgtgacggtggtaacagtgcaccgcgtcgtcgtcctacttcaggt
aatgagtag
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