Pragia fontium: QQ39_07615
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Entry
QQ39_07615 CDS
T03952
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pfq
Pragia fontium
Pathway
pfq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pfq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QQ39_07615
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pfq03019
]
QQ39_07615
Enzymes [BR:
pfq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
QQ39_07615
Messenger RNA biogenesis [BR:
pfq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
QQ39_07615
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
UvrD-helicase
AAA_22
EBNA2_Core
Cas3-like_C_2
P-loop_SecA
Shikimate_DH
Utp25_C
HEM4
Motif
Other DBs
NCBI-ProteinID:
AKJ41968
UniProt:
A0ABQ5LEG6
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All DBs
Position
1700481..1701884
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AA seq
467 aa
AA seq
DB search
MSFDSLGLNAEILRAVEEQGYREPTPIQQQAIPVVLSGRDLMACAQTGTGKTAGFTLPLL
QLLTANNDSPRGRRPVRALILTPTRELAAQVGENVQEYSRHLNIRSLVVFGGVSINPQMM
KLRGGVDVLVATPGRLLDLEHQNAVDLSKVEILVLDEADRMLDMGFIHDIRRVLAKLPVK
RQNLLFSATFSDEIKGLASKLLHNPASVEVAKRNTPSELVDQKVHLVDKKRKRELLSQMI
GQGQWQQVLVFTRTKHGANHLAEQLNKDGITASAIHGNKSQGARTRALDEFKNGKIRVLV
ATDIAARGLDIDHLPHVVNYELPNVPEDYVHRIGRTGRAECTGEAVSLVCVDEHKLLRDI
ERLLKLEIPRIAFEGYDPDPTIKAEPIINGRQGRGQGQGPRQNSGRGRSSSQGNGHKDGG
PWGNRNGQAAEGRADSKPRSQKPRSDKPAQQKRASFSGARRSGSGGE
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttgattctctcggcttaaatgccgaaattttgcgcgcggttgaagaacaaggc
taccgtgagccaacccctattcagcaacaggctattccggtggtgttatccggccgtgat
ttaatggcctgtgctcaaaccggtacgggtaaaaccgccggtttcacgctgccactatta
cagctgttaacggcaaacaatgactcgcctcgcggccgtcgtccagtacgtgcattgatt
ctgacgccgacccgtgagctggctgcgcaggttggtgagaatgtgcaggaatatagccgt
catttaaatattcgttcgctggtggtgtttggcggcgttagcattaatccacagatgatg
aaactgcgtggtggtgttgatgtactggtagcgactcctggtcgtttactggatctggaa
catcagaatgcggtagacctttctaaggttgaaatcttagtcctggatgaagcggatcgc
atgttggatatgggctttatccatgatatccgtcgggttctggctaaactgccggtgaag
cgtcagaacttgctgttctcagcgacgttctctgatgaaattaaaggcttggcatcgaag
ctgctgcataatccggcttcagtcgaagtcgccaagcgtaataccccatcagaactggta
gatcagaaagtccacttggttgataaaaaacgcaagcgtgaactgctatctcagatgatt
ggtcagggccagtggcagcaggtgttggtatttacccgcaccaagcacggggctaaccat
ttagcagagcagcttaataaagatggtattactgcttcggctatccacggtaataaaagt
cagggtgcccgtacccgagcgctggatgagtttaagaatggtaaaatccgcgttctggta
gcaacagatatcgctgctcgcggtttggatatcgaccatctgccgcacgtggtgaactat
gagctaccaaacgtaccggaagattacgttcaccgtatcggtcgtactggccgtgctgaa
tgtaccggtgaagcggtttctctggtttgtgtcgatgagcataagctattgcgtgatatt
gagcgcctgttgaagttagagattccacgtatcgcttttgaaggttacgatcctgatcca
actatcaaagctgagccgattatcaatgggcgtcagggaagaggtcagggacaaggacct
cgtcaaaattcaggtcgcggacgttcttcctctcaggggaatggtcataaagatggcggc
ccatggggtaacagaaatggtcaggcggctgaaggccgtgctgatagtaagcctcgtagc
cagaagccgcgctcagataagccagcgcagcagaaacgcgcatcgttctctggcgcacgt
cgttcaggttctggcggcgaataa
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