Pragia fontium: QQ39_14215
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Entry
QQ39_14215 CDS
T03952
Symbol
recD
Name
(GenBank) exonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
pfq
Pragia fontium
Pathway
pfq03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pfq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
QQ39_14215 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pfq03400
]
QQ39_14215 (recD)
Enzymes [BR:
pfq01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
QQ39_14215 (recD)
DNA repair and recombination proteins [BR:
pfq03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
QQ39_14215 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_19
AAA_30
RecD_N
UvrD_C_2
Viral_helicase1
NAT10_TcmA_helicase
AAA_11
SH3_13
UvrD-helicase
AAA_22
SLFN-g3_helicase
UvrD_C
PhoH
nSTAND3
AAA_28
AAA_16
T2SSE
DEAD
Mg_chelatase
Flavi_DEAD
DO-GTPase1
DUF6628
ATPase
CbiA
Motif
Other DBs
NCBI-ProteinID:
AKJ43076
LinkDB
All DBs
Position
complement(3234938..3236797)
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AA seq
619 aa
AA seq
DB search
MFSLLQKAVELAVFRPLDIQLARLLATDDPCLALLVAKLSAQAGAGHVCLSLSTLDERSL
FDGRHGELAAEIWLKAGNPRLTDLISTLERSSAVSDGYQPTPLVLQGERLYLQRMWRDEG
QIAAFFLRQSDDAAVSYPEGLKQALDQLFPFDPTETDWQKVAAAVAATRQLSVISGGPGT
GKTTTVARLLAVLLQLAGESRLRIALAAPTGKAAARLTESLGQAIQSLPLTPSQRQQMPV
EASTLHRLLGVQPNSRHLRHHKDNPLHLDVLIVDEASMVDLPMMARLIAALPEHARFILL
GDRDQLASVEAGAVLGDICRFAEQGYSQQRAEELSRLTGYDIAASTFPQAVAIRDNLCLL
KKSYRFHQHSGIGQLAFAVNRGDGQGAMQCFAQNYADLAWLPVSSADDYLQLLATCVEGY
RDYLAQVKGGDPQQILASFNRFRLLCALRSGPFGIDGLNTRIEQMLLSKRLIEKSTESGG
LWYPGRPVMVSRNDSALGLYNGDIGIALRNDEGEMRVCFQLPDGSIKAVQPSRLPACETA
YVMTVHKSQGSEFEHTVLVLPDTFSPLLSRELVYTAITRARQKLTLFANENILLSAILTP
TERHSGLAARLVESDGVEL
NT seq
1860 nt
NT seq
+upstream
nt +downstream
nt
atgtttagcctgttacagaaagcggttgagcttgccgtttttcgtccgctggatattcag
cttgctcgtttgttagcgacggatgatccttgtctggcgctgttagtggctaaactcagc
gcacaagccggggcagggcacgtttgtttgtcgttgagcacccttgatgagcgaagttta
tttgatggacgccacggggagctggcggcggagatttggcttaaggcgggtaatccgcga
ttgaccgatcttatctccacccttgaacgttcatccgccgttagcgatggctatcagcca
accccgctggtattacagggggaacgcctatatttacagcgtatgtggcgtgatgaaggg
caaattgccgctttctttctgcggcagagtgatgacgctgcggtgagttatccagaaggg
ctaaagcaggcgttggaccagctctttccatttgatcccacagagaccgactggcaaaaa
gtggcggcggcggttgcggctacccggcaattatcggtgatttctggtggaccaggaacc
ggtaaaactaccacggtagcgcgtttattggcggtactacttcagcttgccggtgaatcc
agactgcgtattgcattagcggcacccaccggtaaagcggcagcgcgtttaacggaatct
ttagggcaggcgattcagagtttgccgttaacgcctagccagcgccaacagatgccggtt
gaagcgtcaacgttacaccgtttacttggggtgcaaccgaatagccgtcacctgcgacat
cataaagataatccgttacatcttgatgtgctgattgttgatgaagcgtcgatggtggat
ttaccgatgatggcacgtctgatagccgctttacctgaacatgcccggtttattttattg
ggcgatcgcgatcaactggcatcggtagaagccggggcggttttaggggatatttgtcgc
tttgctgaacagggctacagccagcagagggcggaagaactgtcacggttgactggatat
gatattgcagccagcacattccctcaggccgtggcgataagggacaatttgtgcctgttg
aagaaaagttatcggttccatcaacactctggtattggtcaattggcatttgcggttaac
cgaggggatgggcaaggtgcaatgcaatgctttgctcagaactatgcggatttagcctgg
cttccggtgagcagcgcggatgattatttacagttgttggcaacctgtgttgaaggttat
cgcgattatttagctcaggtaaagggcggcgatccacagcaaattctggcatcgtttaac
cgttttcgtttgctatgtgcgttgcgcagcggaccttttggtattgatggactcaatacg
cgcatcgaacagatgctgttaagtaagcggttaattgagaaatcgacggaaagcggcggg
ttatggtatccgggacggcctgtgatggttagccgaaatgatagtgctttggggctatac
aacggtgatatcggtatcgctctgcgtaacgatgaaggagaaatgcgcgtctgttttcag
ctgccggatggttcgattaaggcagtacagcccagtcgtttacccgcttgtgaaacggct
tatgtgatgacggtgcataaatctcagggctcggagtttgagcatacggtgctggtatta
ccggatacgttttcacctttgctgagtcgggagttggtgtataccgccattactcgtgcg
cgccaaaagcttacgctatttgctaatgaaaatatcctgctgtcagccattctgacgcca
acggagcgccacagtggattagcggctcggttggttgagtctgatggagttgaactataa
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