Pragia fontium: QQ39_14220
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Entry
QQ39_14220 CDS
T03952
Symbol
recB
Name
(GenBank) exonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
pfq
Pragia fontium
Pathway
pfq03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pfq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
QQ39_14220 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pfq03400
]
QQ39_14220 (recB)
Enzymes [BR:
pfq01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
QQ39_14220 (recB)
DNA repair and recombination proteins [BR:
pfq03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
QQ39_14220 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_11
AAA_25
ResIII
Motif
Other DBs
NCBI-ProteinID:
AKJ43077
LinkDB
All DBs
Position
complement(3236790..3240326)
Genome browser
AA seq
1178 aa
AA seq
DB search
MSQQPLALDPLSLPLFGERLIEASAGTGKTYTLAALYLRLLLGLGQEAAYPRPLSVEEIL
VVTFTEAATEELRNRIRDNIHQLRIACIRNESHDPLLNQLLAELPNKATATALLLAAERQ
MDEAAIFTIHGFCQRMLSHNAFESGVLFEQSLIEDELPLRRQAVADFWRRHCYPLPLPVA
QVISAEWTGPERLLADITPYLHGEAPKLRQPPSQDDILQRHQQIIERIEALKQRWREHAA
DLEALISGSGVDKRSYSSKNLPNWLQKVGVWVEEEIQDYKLPKELNNFRQSILEQKTKKG
EAPVHPLFTAIDLLYSEPLTLRDLILAKALSEVRQSVQQEKRQRAEMGFDDLLSRLDMAL
QRPEAEALANAIRQRYPVAMIDEFQDTDPQQYRIFHKLYGGRQDTGLLLIGDPKQAIYAF
RGADIFTYMQARNQVSSHYTMETNWRSSAQMVDTVNCLFQRLPAPFIFEQIPFLTVKPAE
KNRSLSFEFDGVNQPAMSLWLQSGEGSGQSEYQQVMARRCAVQIRDWLTAGQQQRGWLVS
AKERRPVTAADIAILVRTGKEAAIVRDALSALAIPSVYLSNRESVFTTPEAREILWLLQA
VLTPEKERALRSALASSLLGMDARQIDAINQDERQWDVLVEEFSAYRQLWLKRGVLPMLR
ELMSKRKLAENLLVTLGGERRLTDIMHIGELLQEASLKLESEHSLVRWLAQQITQPNDRA
DSQQLRLESDRNLVKVVTIHKSKGLEYPLVWLPFICGFRKQSQGLYHDRETFSAVLDLSE
SEESQTLAEEERLAEDLRLLYVALTRSVYHCSIGVTPIYSGNRRLGNSDLHHSAIGYLLQ
KGQAGDATLLSESLRELVQNHGIKVYPAEIDDTAQWQDSIMLPETLAARTFSGQRQNSWR
VTSYSGLQQQGSSHHYELLPRFDTDAAGEKGQAQPDTMTPHSFPKGAAPGTFLHDLLEET
DFSQPIDELKLSEQVLLQGLDERWTPVLQQWLETIVSTPLDEQGICLKAIEANARQAELQ
FYLPIGPMLQAESLDTLVKRYDPLSANCPALNFRQVRGMLKGFIDLVFCWQGRYYLLDYK
SNWLGESGEFYTQQAMANAMCEHRYDLQYQLYSLALHRYLRHRIANYDYQRHFGGVFYLF
LRGVEPNKPGQGIFHCRPEWELVDGLDRLFAGEGEPDV
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
atgtctcagcagcctttggctttagatccgctatcgctcccgctgtttggggagcgtttg
attgaagcgtcggcaggtacgggaaaaacctataccttggcggcgctctatttgcgtttg
ctattgggattggggcaagaggctgcttatccaaggccgttatcggttgaagaaattttg
gtggtgacgtttactgaagcggcaacggaagaattgcgtaatcgtattcgggataacatc
catcagctgcgtattgcctgtatccgcaatgaaagccacgatccattgctgaatcaacta
ttagctgaattacccaacaaggccacggcgacggctctgttattggcggcagaacgccag
atggatgaagcggctatttttaccattcatggcttttgtcagcgtatgttgagccataat
gcttttgagtctggcgtactgttcgagcagtcactgattgaagatgagcttcccttacgg
cgtcaggcggtggctgatttctggcggcgacactgttatccattacctttgcccgttgct
caggtgattagtgcagaatggactggcccggaacgtttgttggcggatattacgccttac
ctacacggtgaggcgcctaaactgcgccagcccccttcgcaggatgatattctgcaacgc
catcagcaaattattgagcgcattgaagcgttgaaacagcgctggcgagagcatgcggcg
gatctggaagcgttaattagcggctccggggtggataaacgcagctatagttccaaaaac
ttgcctaactggctacagaaagtgggcgtgtgggtagaggaagagattcaggattataaa
ctgccgaaagagttaaataactttcgtcagtcgattctcgagcaaaagaccaagaaaggt
gaagccccggttcatccgttatttactgcgatagacctgctgtattccgagccactcacc
ttacgggatctgattctggcgaaggccttaagcgaagtgcgtcagtcggttcaacaagag
aaacgtcagcgggcggaaatggggttcgatgacttactcagccggttggatatggcatta
cagcgcccggaggcagaagcgctggctaatgccatacgccaacgctatccggtggcaatg
attgatgagtttcaggataccgatccacagcagtaccgtatttttcataagttatacggc
ggtcgtcaggataccggtttattactgattggtgaccccaaacaggccatctatgcgttt
cgcggtgcggatatttttacctatatgcaggcgcgtaatcaggtgagcagtcactacacg
atggagaccaactggcgttcttctgctcagatggtggatacggttaattgtctgtttcag
cgcctacccgcgccatttatttttgaacaaattccttttctgacggtaaaaccggcggag
aaaaatcgttccttgagttttgagtttgacggcgtgaatcaaccggcaatgtcgctttgg
ttgcagtcgggagaaggctcggggcaaagcgaatatcagcaggttatggctcgtcgttgt
gcggtgcaaatccgcgattggctaacggccggtcagcagcagcgcggctggttagtgagt
gctaaggaacgtcgcccggtaactgccgctgatattgctattctggtgcgtaccgggaaa
gaagcggcgatagttcgtgatgcactgagtgcgttggcgataccgtcggtttatttatcc
aatcgcgaaagcgttttcaccacgccagaagccagagagattttgtggttgctacaggcg
gtgctaacgccggaaaaagagcgagcgttacgcagtgcgttagccagtagcttactgggg
atggatgctcggcagattgatgccattaatcaggatgagcgccagtgggatgtgctggtg
gaggagtttagtgcttaccgccagctgtggttaaaacgcggcgtactgccgatgctgcgt
gagctgatgtctaagcgtaagctggcagaaaatctgttggtcaccttgggtggtgagcgc
cggttaaccgatattatgcacattggtgagctgttgcaggaagcgtcattaaagctggaa
agcgagcactcactggttcgttggttggcgcagcagattactcagcctaacgatcgggcg
gatagccagcaactgcgtttggaaagtgaccgtaatctggtcaaggttgtcaccatacat
aaatcgaaaggattggagtatccgctggtctggctaccgtttatctgcggttttcgcaag
caaagtcaggggttgtatcacgaccgagagacattctctgcggtcttggatctgagtgag
agtgaagagtcgcagacactggctgaagaagaacgtttagcggaagatttacgtctactg
tatgtggcactgacgcgctcggtttatcattgcagtattggcgtaacgccaatttattcc
ggtaatcgacgcttgggcaattctgatttgcatcatagtgctatcggctatctgctgcaa
aaaggtcaggctggcgatgccactttattatcagagtcgttacgtgaactggtgcaaaac
cacggcattaaggtttaccccgccgagatagatgataccgcccagtggcaggatagcatt
atgctgccagagacattggcggcgcgcacatttagtgggcagcggcagaatagctggcgc
gtaaccagctattcaggcttgcagcagcaaggttcttcccatcattatgagctattaccg
cgctttgatactgatgcggcgggtgagaagggacaggctcaaccagataccatgacgcct
cattcttttcctaaaggtgcggctccgggtactttcctgcatgatttattagaagaaacc
gatttttctcagccgattgatgagctaaagctgagcgagcaagtattgttgcaagggctg
gatgaacgatggacgccggtgttgcagcagtggctggaaaccattgtcagtacgccgctg
gatgaacaggggatctgcctgaaggctattgaggccaatgctcgtcaagccgagttacag
ttttacttacccattggccctatgttgcaggctgagagtttggatacgttagtgaaacgg
tatgacccgctgtcagccaactgccctgcattgaacttccgtcaggttcggggcatgttg
aaaggatttatcgatctggttttttgctggcaagggcgctattacttgctggattacaaa
tccaattggttgggagagagcggcgagttttatactcagcaggctatggctaatgcgatg
tgtgaacatcgttacgatctacagtatcaactgtattcgctggcgctgcaccgctactta
cgtcatcgcattgcgaattatgattaccaacgccattttggcggggtgttttatctgttc
ttacgcggcgttgaaccgaataagcctggacagggaatttttcactgtcgtccggagtgg
gaactggttgatggactcgatcgcctgtttgccggagaaggagagcctgatgtttag
DBGET
integrated database retrieval system
