Pragia fontium: QQ39_15945
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Entry
QQ39_15945 CDS
T03952
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
pfq
Pragia fontium
Pathway
pfq03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pfq00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
QQ39_15945 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pfq03021
]
QQ39_15945 (rpoB)
03400 DNA repair and recombination proteins [BR:
pfq03400
]
QQ39_15945 (rpoB)
Enzymes [BR:
pfq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
QQ39_15945 (rpoB)
Transcription machinery [BR:
pfq03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
QQ39_15945 (rpoB)
DNA repair and recombination proteins [BR:
pfq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
QQ39_15945 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
AKJ43366
UniProt:
A0ABQ5LNV5
LinkDB
All DBs
Position
complement(3660593..3664621)
Genome browser
AA seq
1342 aa
AA seq
DB search
MVYSYTEKKRIRKDFGKRPQVLDIPYLLSIQLDSFQKFIEQDMEGQHGLEAAFRSVFPIQ
SYSGNSELQYVSYRLGEPVFDVKECQIRGVTYSAPLRVKLRLVIYDRDAPAGTVKDIKEQ
EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR
GSWLDFEFDPKDNLFVRIDRRRKLPATIILRALDYTTEQILDLFFDKIVFEIRDNKLQME
LVPERLRGETASFDIEADGKVFVEKGRRITARHIRQLEKDGVNKIEVPTEYIIGKVVSKD
YIDESTGEIICPANMELTLDLLAKLSMAGHKRIETLFTNDLDHGAYMSETVRVDPTSDRL
SALVEIYRMMRPGEPPTREAAENLFENLFFSEDRYDLSAVGRMKFNRSLSREEIEGSGIL
SKEDIIEVMKKLIGIRNGVGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS
LGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTR
ERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRRVRDGMVT
DEIHYLSAIEEGNFVIAQANSNLDDEGHFMEDLVTCRNKGESSLFSREQVDYMDVSTQQV
VSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVATR
GGIVQYVDASRIVIKVNEDEMMPGEAGIDIYNLTKYTRSNQNTCISQMPCVSLNEPVERG
DVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELSCVS
RDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDSSLRVPNGVSGTIIDVQVFTRDGVEKDKRALEIEDMQLKQVKKDL
TEELKIFEAGLFARIHDVLVSGGIEEDKLSKLTHDKWLEIGLSDEDKQNQLEQLAEQYDE
LKSEFEKKLDGKRRKITQGDDLAPGVLKIVKVYLAVKRQIQPGDKMAGRHGNKGVISKIN
PIEDMPYDENGVPVDLVLNPLGVPSRMNIGQILETHLGLAAKGIGDKINTMLKQQQEAAK
LREFIQKAYDLGDDTRQKVDLAKFTDAEVLTLAENLRKGMPIATPVFDGAKEKEIKELLT
LGGLPTSGQITLFDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMP
ESFNVLLKEIRSLGINIELEEE
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcctataccgagaaaaaacgcattcgtaaggattttggtaaacgtccacaa
gtactggacattccttaccttctttctatccagcttgactcgttccagaagttcatcgag
caagatatggaaggccaacatggactggaagctgcattccgttctgtgttccctatccag
agctacagcggcaactctgagttgcagtatgtgagctatcgtcttggtgaacctgtattc
gatgtcaaagagtgtcaaatccgtggtgtgacgtattctgcaccgctgcgcgttaaactg
cgcctggtgatttacgatcgtgacgctccggcgggcacggttaaagacatcaaagaacaa
gaagtttatatgggcgagattccgctcatgaccgataacggtacctttgtcatcaatggt
acagagcgtgttatcgtgtcccagttacaccgtagtccgggtgtgttctttgatagtgat
aagggtaaaacccattcatcgggtaaagtgctgtataacgcacgtattattccttaccgt
ggttcctggttagatttcgagtttgacccgaaagataacttgttcgttcgtattgaccgt
cgtcgtaaattacctgcgaccatcattttacgtgcgctggattacaccactgaacaaatt
ttagacctgttctttgacaagattgtcttcgaaatccgcgataataagctgcaaatggaa
ctggttcctgagcgcttgcgcggtgaaaccgcttctttcgatatcgaagctgacggtaaa
gttttcgtagagaaaggtcgtcgtattactgctcgccatattcgccagcttgaaaaagac
ggcgtcaataaaatcgaagtgccgactgaatacattattggaaaagtcgtttctaaagat
tatatcgacgagagtaccggggaaattatttgccctgcgaatatggaattgacgttggat
ctgctggctaaattaagcatggcaggccataagcgtatcgaaacgctgttcaccaacgat
ctggaccacggcgcttatatgtctgagaccgtgcgcgtagacccaacctctgatcgctta
agtgcattggttgaaatctatcgcatgatgcgtcctggtgaaccaccaacgcgcgaagca
gcagaaaatctgtttgagaacctgttcttctctgaagaccgttacgatctttctgcggta
ggccgcatgaagttcaaccgttctttaagtcgtgaagaaattgaaggctccggcatcctg
agcaaagaagatatcatcgaagtgatgaagaaacttatcggcatccgtaatggtgttggt
gaagtggatgatatcgaccacttgggtaaccgtcgtattcgttccgttggtgaaatggct
gaaaaccagttccgtgtcggcttagtgcgcgttgagcgtgcggttaaagagcgtctgtca
ttaggcgatctcgacacactgatgcctcaggacatgatcaacgctaagccgatttcggcg
gcggtgaaagagttctttggttccagccaattatcccaatttatggaccaaaacaacccg
ttgtctgagattacgcacaagcgtcgtatctctgcactgggcccgggcggtttaacgcgt
gagcgtgccggctttgaagtacgtgacgtacacccgactcactatggtcgcgtatgtcca
atcgaaaccccggaaggtccaaacatcggtttgattaactcattatctgtgtatgcacag
actaacgagtatggtttcctggaaaccccttatcgtcgcgtacgtgacggtatggtaacc
gatgagattcattacttatctgccattgaagaaggcaacttcgttatcgctcaggctaac
tcaaacctggatgatgaaggccacttcatggaagacctggtgacctgtcgtaacaaaggc
gaatcaagcttattcagccgcgaacaagttgactatatggacgtttcaacccaacaggtt
gtgtccgtaggtgcttctttgattccgttcctggagcatgatgacgccaaccgtgcattg
atgggtgcaaacatgcaacgtcaggcggttcctactctgcgtgctgataagccgctggtt
ggtaccggtatggaacgtgctgtagcggttgactccggcgtaaccgccgttgccacacgc
ggcggtattgttcagtacgtcgacgcatcgcgtatcgtgattaaagttaacgaagacgag
atgatgccgggcgaagcaggtatcgatatttataacctgacgaaatacacccgttctaac
cagaacacctgtatcagtcaaatgccatgcgtctctttaaatgagccagttgaacgcggt
gacgtgttagctgacggcccatcgactgacttgggcgaattggcactaggccagaacatg
cgcgtcgcgttcatgccttggaacggttataacttcgaagactccatcttggtttctgag
cgtgttgtacaggaagaccgttttacgactatccatattcaggaactgtcttgcgtatct
cgtgataccaagttagggccggaagagatcactgctgacatccctaacgtgggtgaagcg
gcactgtctaaactggatgagtcaggtatcgtttatatcggtgctgaagtgaccggcggc
gacattctggttggtaaggtaacgcctaaaggtgaaactcaactgacgccagaagagaaa
ctgctgcgcgcgatttttggtgagaaagcgtctgatgttaaagactcctcactgcgcgtg
ccaaacggcgtttcaggtaccattatcgacgttcaagtctttacccgtgatggcgtagag
aaagacaagcgtgcgcttgaaatcgaagatatgcagcttaagcaggttaagaaagacctg
actgaagaactgaagattttcgaagcaggtctgtttgcgcgtattcacgatgtgctggtt
tccggcggcatcgaagaagacaaactgagcaagctgactcacgacaagtggctggaaatt
ggattaagtgacgaagacaagcaaaaccaactggaacagttggctgagcagtacgacgaa
ctgaaatccgaattcgagaagaaacttgacggtaagcgtcgcaagatcactcagggcgat
gatttagctcctggcgtactgaagattgtcaaagtctacctggcggttaaacgtcagatc
cagcctggtgacaagatggcaggtcgccatggtaacaaaggtgttatctctaagatcaac
ccgatcgaagatatgccttacgatgaaaacggcgtgcctgttgacctcgtgctgaacccg
ctgggtgtaccatcacgtatgaacatcggtcagattctggagacccacttgggtctggct
gcgaaaggtatcggtgacaagatcaacaccatgctgaagcagcagcaagaagcggcaaaa
ctgcgtgaatttatccagaaagcttacgatctgggtgatgatacgcgtcagaaagtagac
ttagctaagtttactgatgcagaagtgctgactctggcagagaacctgcgtaagggtatg
ccgattgcgacaccagtgtttgatggcgcaaaagagaaagaaatcaaagaacttctgacc
ttgggcggtttaccgacttctggccagatcacgttgtttgatggacgtaccggtgaacag
ttcgaacgtccggttaccgttggctatatgtacatgctgaaacttaaccacttggttgat
gacaagatgcatgcacgttctaccggttcttacagcctggttactcagcagccgctgggt
ggtaaggctcagttcggtggacaacgcttcggtgagatggaagtgtgggcgctggaagct
tatggcgcagcgtacactctgcaggaaatgctgaccgtcaagtccgacgatgtaaacggc
cgtaccaagatgtacaaaaacatcgtggatggcaaccatcagatggagccaggcatgccg
gaatccttcaacgtattgttgaaagagatccgctcgctgggtatcaacatcgagttggaa
gaggaataa
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