Pragia fontium: QQ39_17075
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Entry
QQ39_17075 CDS
T03952
Name
(GenBank) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
pfq
Pragia fontium
Pathway
pfq03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
pfq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
QQ39_17075
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pfq03400
]
QQ39_17075
Enzymes [BR:
pfq01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
QQ39_17075
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
QQ39_17075
DNA repair and recombination proteins [BR:
pfq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
QQ39_17075
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Motif
Other DBs
NCBI-ProteinID:
AKJ43555
LinkDB
All DBs
Position
complement(3916653..3917462)
Genome browser
AA seq
269 aa
AA seq
DB search
MPELPEIETSRRGIEPYMVGHNIVRTIVRQPKLRWPVSRQIIELENASVLSVQRRAKYLL
IELSSGWIIGHLGMSGSVRMLPKFSEPEKHDHVDFLLSNGKVLRYTDPRRFGSWLWEYDL
SLSSVLKNLGPEPLGDDFDGAYLFNKSRNKKTLIKPWLMDNKLVVGVGNIYASESLFEAR
ILPHRLAGSLTESEAELLVATIKRVLQRSIEQGGTTLKDFLQADGKPGYFAQELQVYGRS
GEPCRVCGTLIESTKHAQRTTFFCRYCQH
NT seq
810 nt
NT seq
+upstream
nt +downstream
nt
atgccagaattgccggaaatagagacgagtcgccgaggtattgagccttatatggtcggt
cataatattgtcagaactatcgttcgtcagcctaagctgcgctggccggtttcccgacaa
attattgagttagaaaatgcatccgtcttaagcgttcagcgtcgggctaaatatttatta
attgaactatccagcggctggattattggccacttgggaatgtcgggcagcgtcaggatg
ttgccgaaatttagcgaaccagaaaagcatgatcatgtggattttcttttatccaacggt
aaggttttacgttataccgatccacgtcgatttggctcttggttatgggaatacgacctg
tctctcagcagcgtgctgaagaatttgggccctgaaccattgggtgatgatttcgatgga
gcttatctatttaataaatcgcgtaataaaaagaccttgatcaagccttggctaatggat
aataagctcgtggtgggggtaggtaatatctatgccagcgagtcgctgtttgaggcaagg
atactaccacatcgcttggctggatcattaaccgagagtgaagctgagttactggtagca
accattaagcgagtattacagcgctcgatcgagcagggtggtacgacactaaaagatttt
ctgcaggctgatggaaaacccggttattttgcccaggaactccaggtttatggccgtagc
ggtgaaccttgccgagtatgtggcacattaattgaaagcaccaaacatgcacagagaacg
acttttttttgccgctactgccaacattaa
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