Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1: PFREUD_04360
Help
Entry
PFREUD_04360 CDS
T01252
Symbol
sbcC
Name
(GenBank) ATP-dependent dsDNA exonuclease SbcC
KO
K03546
DNA repair protein SbcC/Rad50
Organism
pfr
Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1
Brite
KEGG Orthology (KO) [BR:
pfr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pfr03400
]
PFREUD_04360 (sbcC)
DNA repair and recombination proteins [BR:
pfr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
PFREUD_04360 (sbcC)
Archaeal homologous recombinant proteins
PFREUD_04360 (sbcC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
AAA_29
SMC_N
AAA_13
AAA_21
Motif
Other DBs
NCBI-ProteinID:
CBL55970
UniProt:
D7GIP8
LinkDB
All DBs
Position
complement(528647..531811)
Genome browser
AA seq
1054 aa
AA seq
DB search
MQILRLELSGIGPYAGTEHVDFSRLGADGLFLLEGATGSGKTTIIDAIVFALYGQVAADD
SSGDRMVSTHRKAASEPYVDLVVDTSRGLYRVRRTPQFTRPKKRGEGLTSVNATIRLWKL
ADPDDQDGEPISANIQDANKELQAAIGLSRDQFTQTVVLPQGHFANFLRSKPEERRGLLQ
QIFGTELFERAQQELTAMAADYKARADQARTQIRSLAERFAHSAWPDEAPTPDGSPASEA
TPVPADETPAGHQDVPVPGPTPREAFLALLDDDDTAPLVAAAHTRLRELQADTEQRTQAV
AGARERLGGARAARDAAQRIIALKAEHDALVVQRQELEARGDQIAADRVRLDAATRAAGS
ARPLAAARRAAAALSTATTEWEVVAAEIAATDDGVLLEQVRPHAVGNLGSPDGSDDAALS
TLRDEITRLGTTRGQLGQLAQLEAGLPARHARLDADNARLAEIATRVATTQQELAELIAG
RDELSQRHGQLPPTDDALTGASLAQQAATRTLEAAQAAEQDASQLVALRAAEQEAIDAAD
LAEREYRTARAGWLDGLAGTLAGELVDGDECPVCGATSHPHPATPAQGAATRDDVERLAQ
QARSLADARARAAMQCDVAAQHRVDHQKAAGGKDVAQARADLDRADAELAGASAAAAQRV
ELTARIADADRQVTTTRSTLAELQASASGLKGAIATATTQLDDDHHQIDRHREDYPDIAG
RLAHVARRLDAATRIVDALQALAAARREGVARRKEADQALADAGFATSDEAGAAMLDAEQ
IAALRQSITDFDTRRARIAAQLERAELVAAVASPVPDLESLDTKLADAEQAQEAAELALG
RATAHLAQSRQAAEELEAASLALTRMAPEAAPVVRMAELATAGDRNLRKVTLPTYVLLRR
FEQVIDQANDRLESMTHGRYSLQRTDEKEGRSRKLGLGLVVIDHLPVDTARETQTLSGGE
TFLASLAMALGLSDTVTAEAGGISLDSLFVDEGFGSLDPESLDMVMGQLEKLRAGGRNVG
VVSHVTEMKQRIAERISVRKLPDGSSTLTTTVDD
NT seq
3165 nt
NT seq
+upstream
nt +downstream
nt
atgcagatcctgcggctggaactgtcgggcatcggtccctatgccggcaccgagcacgtg
gacttctcccggctgggtgccgacgggctgttcctgctggagggcgccaccggctcgggg
aagaccaccatcatcgatgcgatcgtcttcgcgctctacgggcaggtggccgccgacgac
tccagcggcgatcgcatggtgtcgacccatcgcaaggcggccagtgagccctatgtcgac
ctggtggtcgacacctcgcgcggcctgtaccgagtgcgccgcaccccacagttcacccgt
cccaagaagcgtggcgagggcctcacctcggtgaacgccaccattcgactgtggaagctg
gccgaccccgacgaccaggacggcgaacccatctcggccaacatccaggacgcgaacaag
gagctgcaggctgccatcggattgagccgcgaccagttcacccagacggtcgtgctgccg
cagggccatttcgccaacttcctgcgctccaagcccgaggaacgccggggcctgctgcaa
cagatcttcggcaccgagctgttcgagcgcgcccagcaggaactgaccgcgatggccgcg
gactacaaggcccgcgccgatcaggcccgcacccagatcaggtcgctcgccgagcgcttc
gcccattccgcatggcccgatgaggcgcccacgcccgacgggtcccccgcgtccgaggcg
acaccggtaccggccgacgagacgcccgcagggcaccaggacgtcccggtgccgggcccc
acaccccgcgaggccttcctcgccctgctcgacgacgatgacaccgctccgctggtcgct
gcggcccacacacggctgcgggagctgcaggccgacaccgagcagcgcacacaggcggtc
gccggcgcgcgggaacggctcggcggggcccgcgccgcgcgcgatgcagcgcagcgcatc
atcgccctgaaggccgaacatgacgccctggttgtgcaacgccaggagctggaggcccgc
ggtgaccagatagccgcagaccgggtgcgcctggacgccgcgacgcgggccgccggaagc
gcccgcccgctcgccgcagcccgccgcgcggccgcggcgctgtccaccgccaccaccgag
tgggaggtggtggccgctgagatcgctgccaccgacgacggtgtgctgctggagcaggtg
cgcccgcacgcggtggggaacctcgggtcgccggatgggtccgatgacgccgcgctctcc
accctgcgcgatgagatcacccgcctgggcaccacccgcggacagttgggccagctggcc
caactcgaggcaggactacctgcccgccacgcccgcctcgacgccgacaatgcacggctg
gccgagatcgccacccgggttgccacgacgcagcaggagctcgcggagttgatcgcaggc
cgcgacgagctctcacaacgccacggccaacttccccccaccgacgatgcgctcaccggc
gcctccctggcgcagcaagcggccacccggacgctcgaggctgcgcaggccgccgagcag
gatgcgtcccaattggttgcactgcgcgccgcggagcaggaggcaatcgacgcggcagac
ctggccgaacgggaataccgcacggcccgggccggctggctcgacgggctggccggcacc
ctggcaggcgagctggtcgacggcgatgagtgcccggtctgtggcgccaccagccatccc
cacccggcaacgccggctcagggtgcggcgacgcgcgatgacgtggagcgcctggcccag
caggcccgctcactggccgatgcccgggcccgggcagccatgcagtgcgacgtcgccgca
cagcaccgcgtcgaccaccagaaggccgccggcgggaaggacgtggcacaggcccgggcg
gacctcgatcgggccgacgcggaactggccggtgccagtgccgcggcagcccagcgggtg
gagctcaccgcgaggatcgccgacgccgaccggcaggtgaccaccacccggtccacgctc
gccgagctgcaggccagcgcgtccggcctcaagggcgccatcgcgacggccaccacgcag
ctggacgatgaccaccaccagatcgaccggcaccgcgaggactatccggacatcgccggg
cggctggcgcacgtcgcacgacggctcgacgcggccacccgcatcgtcgacgcgttgcag
gcgcttgccgcggcccgccgggaaggcgtcgcacggcgcaaggaggccgaccaggccctg
gccgatgccggcttcgccacctctgacgaggccggcgccgccatgctcgacgccgagcag
atcgcggcgctgcgccagtcgatcaccgacttcgacacgcgccgggcccgcatcgcagca
cagctggagcgtgccgaactcgtggccgccgtcgcgtcgcccgtccccgacctcgagtca
ctggacaccaagctggccgacgccgagcaggcccaggaagccgccgagttggcgttgggc
cgcgccacggcgcacctggcccagtcgcgacaggccgccgaggagttggaagccgccagc
cttgcgttgacgcggatggcgcccgaggccgcccccgtggtgcggatggccgaactggcc
acggcgggcgaccgcaacctgcgcaaggtcaccctgcccacctatgtgctgctgcgtcgc
ttcgagcaggtgatcgaccaggccaacgaccggctcgagtcgatgacccacggccgctac
agcctgcagcgcaccgacgagaaggagggacgttcgcgcaagctcgggttgggcctggtg
gtgatcgaccacttgccggtggacacggcgcgcgagacgcagacgctgtccggcggcgag
accttcctggcatccctggccatggcgctgggcctgtccgacaccgtcaccgccgaggcc
ggcggcatctccctggacagcctgttcgtcgacgagggattcggctccctggaccccgaa
tccctcgacatggtgatgggccaactcgagaagctgcgcgccggtgggcgcaatgtcggc
gtggtgagccacgtcaccgagatgaagcagcgcatcgccgaacgcatcagcgtgcgcaag
ctgcccgacggcagctcgaccctgaccaccacggttgacgactga
DBGET
integrated database retrieval system
