Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1: PFREUD_08660
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Entry
PFREUD_08660 CDS
T01252
Symbol
holA
Name
(GenBank) DNA polymerase III, delta subunit
KO
K02340
DNA polymerase III subunit delta [EC:
2.7.7.7
]
Organism
pfr
Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1
Pathway
pfr03030
DNA replication
pfr03430
Mismatch repair
pfr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pfr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PFREUD_08660 (holA)
03430 Mismatch repair
PFREUD_08660 (holA)
03440 Homologous recombination
PFREUD_08660 (holA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pfr03032
]
PFREUD_08660 (holA)
03400 DNA repair and recombination proteins [BR:
pfr03400
]
PFREUD_08660 (holA)
Enzymes [BR:
pfr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PFREUD_08660 (holA)
DNA replication proteins [BR:
pfr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
PFREUD_08660 (holA)
DNA repair and recombination proteins [BR:
pfr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
PFREUD_08660 (holA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta_C
DNA_pol3_gamma3
Motif
Other DBs
NCBI-ProteinID:
CBL56392
UniProt:
D7GCY1
LinkDB
All DBs
Position
985097..986122
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AA seq
341 aa
AA seq
DB search
MSAKTSSKPVFGSVTLVHGSEQLLSERAVAALRKRAMAEEPGLQLVELVGGDMSPADFVE
ASGGSLFADHSLVIITGAESMVPESVDALVAFAGAPSPEVGVIVVHPGGNKGRGLVDKLR
KAKAGVVEVVAPKAWELPKFVQAEARAARVGMESDAAQTLVDAVGNDLRALAGAVSQLAS
DWAGERLSSEMISRYFQGRAEVTSFAVSDAVLAGQTGQALERLRWALDLGVAPVLVTSAL
ANGLRSLGRYLDVRAERMSDIEMSRIVGVPPWKVKTLARQSRLWSETAVARGLIALSRAD
AAVKGAATDAGFALEQLILALDHARRDDASGHRRSAGVRRR
NT seq
1026 nt
NT seq
+upstream
nt +downstream
nt
atgagcgcaaaaaccagcagcaagccagtgttcgggtcggtgaccctggtccatggttcc
gaacagctgttgtcggaacgggcggtggctgcattgcgcaagcgcgccatggcggaggag
cccggcctgcaattggtcgaactcgtgggtggtgacatgagcccggccgacttcgtcgag
gcgagtggtggctcgctgttcgccgatcacagcctggtgatcatcacgggggccgagtcg
atggtacccgagtcggtcgacgccctcgtcgcattcgcgggggcccccagcccggaggtc
ggcgtcatcgtggtgcacccgggagggaacaagggccgcggactggtcgacaagttgcgc
aaggcgaaggccggtgtggtcgaagtggtcgcccccaaggcgtgggaactgccgaagttc
gtgcaggcggaggcgcgcgccgcccgggtgggcatggaatccgacgcggcccagaccctg
gtcgatgccgtcggcaacgacctgcgggcacttgccggggcggtcagccagctggccagc
gattgggcgggggagagattgtcctccgagatgatctcacgctatttccagggacgtgcc
gaggtcaccagcttcgcagtcagcgatgcagtcctggcgggccagaccggccaggccctg
gagcgcctgcgctgggcactggacctgggcgtggcaccggtgctcgtcaccagcgcgctg
gccaacggcctgcgttccctggggcgctatctcgacgtgcgggcagagcggatgtccgac
atcgagatgtcgcgcatcgtcggcgtccccccctggaaggtgaagacactggcgcgccag
tcccggctgtggagcgagacggcagtggcccgggggctcatcgccctgtcccgcgccgat
gccgccgtgaagggcgccgcaaccgacgcgggattcgcccttgagcagctgatcctcgcg
ctggaccatgcccggcgcgacgatgcgtcgggacatcgtcgcagtgccggtgtgcggcgt
cgttga
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