Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1: PFREUD_09880
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Entry
PFREUD_09880 CDS
T01252
Symbol
uvrD
Name
(GenBank) DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
pfr
Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1
Pathway
pfr03420
Nucleotide excision repair
pfr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pfr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PFREUD_09880 (uvrD)
03430 Mismatch repair
PFREUD_09880 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pfr03400
]
PFREUD_09880 (uvrD)
Enzymes [BR:
pfr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PFREUD_09880 (uvrD)
DNA repair and recombination proteins [BR:
pfr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PFREUD_09880 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
PFREUD_09880 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
HRDC
UvrD_C_2
Viral_helicase1
AAA_30
Motif
Other DBs
NCBI-ProteinID:
CBL56513
UniProt:
D7GDA2
LinkDB
All DBs
Position
1117364..1119520
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AA seq
718 aa
AA seq
DB search
MVAGVMSDPARNSPPPMTDESVLSGLDKDQRAVAVDVAGPLAVLAGAGTGKTRAITHRIA
HAVLSGAQAPDSILAVTFTTRAAGEMRARLAALGVPRVQARTFHSAALRQIRYFWPRATG
RELPEIAGSTFGLVAEAARRHHVRTDTAVIRDLSSEISWAKSTNVLPAEYAAMAERAGHQ
VSGVTPATVAKVAADYERVKAERQVMDYDDILLCAVSLMHEHPEVAQEFRSVYRHFVVDE
YQDVSPLQHSLLLQWLGDCDDLCVVGDPDQAIHSFAGADARFLTNFSREFPDAHVLHLNA
NYRSTPQILKAANELLHPPGRPAVGRGVILRPVLDAGRPVDLAAAQDPVAEAGHLAGWLA
ARHRAGIAWSDMAVLFRVSAQSPALESALDGEHIPYHVRGSERFFERAEVRTALGRLTNV
AHSDPQADPGESLDEVLTGLGWTPQAPEGQGRVRERWESWGALREMGQQLVSDGADSLDR
LVAQIAERASMQHAPVGEGVTLSTLHSAKGLEWEAVALVGVQEGLLPFSLAKTPAQVAEE
RRLFYVGITRARQALRISWATSGPNGRGRRNPSRFLGGLLGESTGSPTVDPRAARGPRTK
RVARCIVCRRPMTNAVEVKLGHHEGCEVDYDEDLLARLKAWRLAESKQHSLPAYVVFTDT
TLMAIAQYQPRDDESLMKIRGLGTAKLRRYGAQLLRIIDGAGAEIVGADATSDAPSAS
NT seq
2157 nt
NT seq
+upstream
nt +downstream
nt
atggtggcaggcgtgatgagtgatcccgcgcgcaattccccgcccccgatgaccgacgaa
tcggtgttgtccggattggacaaggaccagcgggccgtcgcggttgatgtggccgggccg
cttgcggtgctcgcgggggccggcacgggcaagacgcgcgccatcacccaccggatcgcc
catgcggtgctgagcggcgcccaggcacccgattcgattctcgccgtgaccttcacgacg
cgcgctgcgggggagatgcgggcccggttggcggcgctgggggtgccccgggtccaggcg
cgcaccttccactcggccgcgctgcgccagatccgctatttctggccgagggcgaccggc
cgggagttgccggagatcgctggctcgacattcggtctggtggccgaggccgccaggcgt
caccatgtacgcaccgatacggccgtgatccgtgatctcagcagtgagatctcctgggcc
aagtccaccaacgtcctgccggccgagtacgccgcaatggccgagcgcgccggacaccag
gtctccggtgtgacccccgcaaccgtggccaaggtggccgccgactatgagcgggtcaag
gccgaacgccaggtgatggactatgacgacatcctgctgtgtgcggtgtccctcatgcac
gagcatccggaggtggcccaggagttccgctcggtctatcggcactttgtcgtcgacgag
taccaggacgtcagtccgctgcagcacagccttctcctgcaatggctgggggattgtgac
gatctgtgcgtggtgggcgatccggatcaggccattcactcgttcgccggtgccgatgcg
cgtttcctgacgaacttctcgcgcgaattcccggatgcgcacgtgctccacctgaatgcc
aactatcgttcaacgccgcagatcctgaaggccgccaatgaactcctgcatccgccgggc
cggcccgccgtgggacgcggagtgatcctcaggccggtcctggatgcggggcgtccggtg
gacctcgccgcggcccaggaccctgtcgcggaggcggggcacctggcgggttggcttgcc
gcgcggcatcgggcaggcatcgcctggtcggacatggcggtgttgttccgggtgtcggcc
caatcgcctgcccttgagtcagccctggacggcgaacacattccctaccacgtgcggggt
tcggagcgcttcttcgaacgcgccgaggtgcgcacggcgctgggacgcctgaccaatgtg
gcgcattccgacccgcaggcagatcccggcgaatccctcgatgaggtgctgacgggactg
ggatggacgccgcaggcacccgaagggcagggtcgggtacgcgaacgctgggaatcgtgg
ggtgccctgcgcgagatgggccagcaactcgtgtccgacggcgccgacagcctcgatcgg
ctggtcgcccagatcgccgagcgcgcctccatgcagcatgcaccggtcggtgagggagtg
acgctgtcaacgctgcattcggccaagggactcgaatgggaggccgtggccttggtgggc
gtgcaggaggggctcctgcccttctccctggccaagacgccggcccaggtcgccgaggag
cgcaggttgttctatgtgggcatcacccgcgcacgtcaggccctgcggatcagttgggcg
acctccggaccgaatggacgggggcgccggaacccctcgcgcttcctgggtggactgctg
ggcgagtcgacgggatcgcccacggtggatccccgagcggcacgtgggccccggaccaag
agggttgcccggtgcatcgtctgccgtcgaccgatgaccaatgcggtcgaggtgaagttg
ggccaccacgaggggtgtgaggtcgattacgacgaggacctgctcgcccgactgaaggcg
tggcgcctggccgagtcgaagcagcattcgctgccggcctacgtcgtgttcaccgatacg
acgctcatggcgatcgcccagtaccagccccgtgacgacgaatcgctgatgaagatccgt
ggactgggaaccgccaagctgcgccgctatggggcgcaattgctgcggatcattgacggg
gcgggcgcagagatcgtcggcgccgatgccacctcggatgcgccgtccgcatcgtga
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