Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1: PFREUD_10340
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Entry
PFREUD_10340 CDS
T01252
Name
(GenBank) Transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
pfr
Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1
Pathway
pfr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pfr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PFREUD_10340
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pfr03021
]
PFREUD_10340
03019 Messenger RNA biogenesis [BR:
pfr03019
]
PFREUD_10340
Transcription machinery [BR:
pfr03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
PFREUD_10340
Messenger RNA biogenesis [BR:
pfr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
PFREUD_10340
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_22
VWA_2
Spore_III_AA
Motif
Other DBs
NCBI-ProteinID:
CBL56557
UniProt:
D7GDE6
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All DBs
Position
1167364..1169334
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AA seq
656 aa
AA seq
DB search
MSETTQAVAENGPADPMSTLSAMRLTELKQVAAQLGIRGVSAMRKGDLINAIDSRRGGSG
AQPAQQQATRHEEGPAERRTRSVSRAPREATIEEGPARDVSTADAIAARLEAAEHSSGRS
RRERNTDSESGTATERTTDNDRGGRSERNSTRTNNSRSDGARNEGSRTSNQGVDDEVGAR
LEQLSGRGNRSEKNERNRDERPERHHNQSNRNHSESTRNDSNRNDSNRNDSGRNDSGRRD
DDEYSGGRRSRRRRQRDRQGRRSNRNSPMNEMETPTVQEDDVLVDVSGILDVLDNYAFVR
TSGYLPGPNDAFVAMGMVRKNGLRKGDVITGAVRQPREGERHSKYNPLVRLDTVNGAGPE
AMRERPDFGKLTPLYPQERLRMETVSTNMTGRIIDLVSPIGKGQRGLIVSPPKAGKTMVM
QNIANAITVNNPEVHLMVVLVDERPEEVTDFKRTTTAEVIASTFDRPADDHTTIAELAIA
RAKRLVELGRDVVVLLDGITRLGRAYNLAAPTSGRILSGGVDSAALYPPKRFFGAARNIE
NGGSLTILATALVETGSKMDEVIFEEFKGTGNMELKLSRQLADKRIFPAVDVEASSTRRE
ELLMSRQELDIIWKLRRALSGQKEQQALETLLSRMKKTRNNSEFLVLISSTTPGSD
NT seq
1971 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgaaaccacgcaggccgtcgcagagaacgggcccgcagatcccatgagcacgctg
agtgccatgaggcttaccgaactgaagcaggtcgccgcgcagttggggatcaggggcgtc
agcgccatgcgcaagggcgatctgatcaatgccattgactcgcgtcgcggcggttccggt
gcccagcccgcacagcagcaggccacacgccatgaggaggggcccgccgagcgccggacc
cgctcagtgtcacgcgcaccgcgtgaggcgacgatcgaggagggcccggcacgggatgtg
tcgacggccgacgcgatcgctgcccgccttgaggccgccgaacacagttcgggacgcagc
cgccgcgagcggaacaccgacagcgagtcgggcaccgccaccgagcggaccacggacaat
gaccgtggcggccgcagcgaacgcaactcgacccgtacgaacaattcccgcagtgacggt
gcccgtaacgagggctcccgcacgagcaaccagggcgtcgacgatgaggtgggtgcccgc
ctggagcagctgagcggccgcgggaatcgttccgagaagaacgagcgcaaccgcgacgag
cgccccgagcgccaccacaaccagtcaaatcgcaaccacagcgagtccacgcgcaacgac
tcgaaccgcaacgactcgaatcgcaatgactcgggtcgcaatgactcaggtcgtcgtgac
gacgatgagtacagcggcggtcggcgctcccggcgtcgtcgccagcgtgatcgtcagggt
cggcgcagcaaccgcaacagtcccatgaacgagatggagacccccacggtccaggaggac
gatgtcctggtcgatgtctccggcatcctggatgttctggacaactacgcgttcgtgcgc
acctcgggctacctcccggggcccaatgacgccttcgtcgccatgggaatggtgcgcaag
aacggactgcgtaagggcgatgtgatcaccggtgccgtgcgccagccgcgcgagggggag
cgccactccaagtacaacccgctggtgcgcctcgacacggtgaacggcgccggccccgag
gccatgcgcgagcgtcccgatttcggcaagctcaccccgctgtacccccaggaacgcctg
cgcatggagacggtctccaccaacatgaccgggcgcatcatcgacctcgtgtcacccatc
ggcaagggccagcgaggcctgatcgtgtccccgccgaaggccggcaagaccatggtgatg
cagaacatcgccaatgccatcacggtgaacaatcccgaggtgcacctgatggtcgtgctc
gtcgatgaacgtcccgaggaggtcaccgacttcaagcggacgaccaccgcggaggtgatc
gcctcgacctttgaccgcccggcagatgaccacacgacgatcgccgagctggccattgcc
cgcgccaagcgcctggtggagctggggcgcgacgtcgtggtgctgctcgacggcatcacc
cgactcgggcgcgcctacaacctcgccgcccccacatcgggccgcatcctgtccggcggc
gtggactcggcggcgctgtatccgcccaagcgcttcttcggcgccgcccgcaacatcgag
aacggtggctcgctgaccatcctggccacggcactggtcgagaccgggtcgaagatggat
gaggtgatcttcgaggagttcaagggcaccggcaacatggagctcaagttgtcgcgccag
ctggccgacaagcggatcttcccggccgtcgacgtcgaggcatccagcacccgtcgcgag
gaactcctgatgagccgccaggagctcgacatcatctggaagctgcgccgggccctgtcc
gggcagaaggagcagcaggcccttgagaccctgctgagccgcatgaagaagacccggaat
aattcagagttcctggtgttgatatcttcgacaacgcccggatcggactga
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