Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1: PFREUD_12550
Help
Entry
PFREUD_12550 CDS
T01252
Symbol
rnd
Name
(GenBank) Ribonuclease D (3-5 exonuclease)
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
pfr
Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1
Brite
KEGG Orthology (KO) [BR:
pfr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pfr03016
]
PFREUD_12550 (rnd)
Enzymes [BR:
pfr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
PFREUD_12550 (rnd)
Transfer RNA biogenesis [BR:
pfr03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
PFREUD_12550 (rnd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
DNA_pol_A_exoN
HRDC
PSME4_C
Phasin_2
Motif
Other DBs
NCBI-ProteinID:
CBL56771
UniProt:
D7GE10
LinkDB
All DBs
Position
1400618..1401955
Genome browser
AA seq
445 aa
AA seq
DB search
MSHQDSGSTTPDIARSGQIDQDTGMPILAMPHEGLPELVDSPEALTRCIEALASGTGPVA
IDTERAQSFRYTARAYLLQFRRTDSGTWLIDPQAFQPSDGSLADFSALREAIASAEWIIH
AATQDLPCLVEIGLYPSRLFDTELAGRLLGFPRVSLGTMIEQHFGVHLLKEHSAADWSRR
PLPPDWIAYAALDVELLIELRNLVADELVAAGKKEWADEEFAHLVDVYRHPQQRPGDPWR
HTSGSHHVRSRRGLALVRALWEQRDEIARELDKAPGKIVPDKAISELASEVTKDSEKMPT
ARDMNKIMGFRRTYAKRYRDRWVAASQQVGQLSAKQLPPMRVPHEGPPHQAHSWQRTHPE
AWARWQVVRPAANEIAEQIGMPPENLIQPEALRWLVWKPLPQINEQAVRARLSEHGVRHW
QQDLLAARFAELLAAVPGPGDGSSA
NT seq
1338 nt
NT seq
+upstream
nt +downstream
nt
atgagccaccaggattcaggctcgaccacgcccgatattgcccgttcaggacaaatcgat
caggacaccggcatgcccatccttgccatgccccatgagggactccccgagttggttgac
tcccccgaggcactgacgcgctgcatcgaggcgctcgcctccggtaccggtccggtggcc
atcgacacggaacgcgcccagagcttccggtacacggcccgggcctatctcctgcaattc
cgtcgcaccgactcgggcacctggctgatcgatccgcaggccttccagccctccgacggg
agcctcgccgatttctctgcgctcagggaggcgatcgcatcggccgaatggatcatccat
gccgccacccaggacctcccctgcctggtggagatcgggctgtatcccagccggctgttc
gacaccgagctggccgggcggctcctcggtttcccgcgcgtgagcctgggcaccatgatc
gaacagcatttcggggtgcacctcctcaaggagcattccgccgccgactggtcgcggcgt
ccgctgccccccgactggattgcctatgcggcactggacgtggagctgctcatcgagttg
cgcaacctcgtggccgatgagctcgtggcggccgggaagaaggaatgggccgacgaggag
ttcgcccacctggtggatgtctaccggcacccccagcagcgtcccggcgatccctggcgg
cacaccagcggcagtcatcatgtccgctcacgtcgcggactggcattggtgcgcgccctg
tgggagcagcgcgatgagattgcccgcgaactggacaaggcaccgggaaagatcgtgccc
gacaaggccatcagcgaactcgcctccgaggtgaccaaggactcggagaagatgccgacg
gcccgcgacatgaacaagatcatgggctttcgacgcacctatgcaaagcgctaccgcgac
cggtgggtcgcggcgtcacagcaggtcggccagctgtccgccaagcaactgccgcccatg
cgggtgccccatgaggggccgccccaccaggcgcattcatggcagcggacccacccggag
gcctgggcccgttggcaggtggtgcgtcccgcggcgaatgaaatcgccgagcagatcgga
atgccaccggagaacctgatccagcccgaagcgctgcgctggctggtctggaagccactg
ccgcagatcaacgagcaggccgtccgcgcgcggctctccgagcacggcgtgcggcattgg
cagcaggacctgttggcagcgcggttcgccgagctgctggccgcggtacccggcccgggt
gacggcagcagcgcatag
DBGET
integrated database retrieval system
