KEGG   Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1: PFREUD_13150
Entry
PFREUD_13150      CDS       T01252                                 
Name
(GenBank) ATP-dependent helicase
  KO
K03724  ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
Organism
pfr  Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1
Brite
KEGG Orthology (KO) [BR:pfr00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pfr03400]
    PFREUD_13150
Enzymes [BR:pfr01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     PFREUD_13150
    5.6.2.6  RNA 3'-5' helicase
     PFREUD_13150
DNA repair and recombination proteins [BR:pfr03400]
 Prokaryotic type
  Other factors with a suspected DNA repair function
   DNA helicases
    PFREUD_13150
SSDB
Motif
Pfam: DEAD_assoc WH_Lhr DEAD WH4_Lhr WH3_Lhr WH2_Lhr Helicase_C ResIII DUF6406 MarR_2 Vexin
Other DBs
NCBI-ProteinID: CBL56833
UniProt: D7GE72
LinkDB
Position
1473201..1477880
AA seq 1559 aa
MTSDATAPANDAAMAGFGPIARTWFTDVFAAPTPVQIAAWQAIGSGNNALVIAPTGSGKT
LAAFLQSLDRLASRATQPALIGASEGAAPTQEPAAHVKGVRVLYISPLKALAVDIERNLQ
APLRGMTATAERLGLPEPRVSVAVRSGDTTAAQRRRIATHPPDILITTPESLFLMLSSKA
AETLRNVETVIVDEVHALAGTKRGAHLMVSLERVAALSQRGGFQRIGLSATVRPPERVAG
FLAGDRDIAVISPPAAKTWDLSVVVPVEDMTEPDAGRDAAEQDGTGRQPSMWPPIERRIL
DLITSHRSTICFVNSRRVAERLTAHLNELHAHDLGVSDEPQPLPAQVMEPSAATKGRDGT
EVPIVASAHHGSVSKQRRAQIEDDLKSGRLPCVVATSSLELGIDMGAVDLVIQVQSPPSV
SSGLQRVGRAGHQVGAISQGVLFPTARGDMLESAVVARRMADGQIEAVHTLRNPLDVLAQ
QLVSMCVNAPHSASELFTIVRHCDAFRQLPRSVFDGVLDMLTGHYPSEDFAELRPRLVWD
RRTDMLSARPGARRLVTTSGGTIPDRGLFGVFLVGEQTASGKHEPGRRVGELDEEMVYES
RVGDVFTLGTSSWRIEDITHSQVMVSPAPGHPGRLPFWRGDSPSRPRELGAAIGASVREL
AAADPGDALARLAHGGLDEMASRNLLAYLTEQREATGQLPDDRTILVERFRDEIGDWRLC
VHCALGAAVLQPWALIIEHAGRERYGVDVHVTATNDGIIIQLPDVDADAPDAGLLSFAAD
DVESLVSEQVFGSALFAARFRECAARALLLPRRNPGTRAPLWQQRIKSAQLLAVAAGYRD
FPIVVETMRECLQDVFDLPGLTSLMSAIASRRVRLVDVETQQPSPFARNLLFGYVGEFVY
DTDQPLAERTLAAMSLDSGMLAELLGTEAGRQMLDVGVATRVEAGLQSVVADRRATTPER
LWEVIRTIGPLTDDECRDRSTPDAAAWLRTLSAEHRIARVQINGRPAWCADTDVGLLRDA
LGIPIPAAMPAPPPRERHLAVRDLVLRWVRRHAAVTTESIRQRYGMAVATAQSALDGLID
EGLVIRGALIAVPPTPGEDSTEYRLGALVGEPDADQYCHEQVLALIKRRTLAQLRNQVEA
VDQQQFGRFLDAWQQLPPAGAQVPQRPASHSAPTPDDLLAVVDLIAGYPIPASMLESVVL
PARLPGYRPSLLDEALATGEMVWTGTRAIGQRDGWICLWPADIGPVPPRESTELTPLATR
LAQRLDAGGGWRVTDLTDESAGPSAVLDALWELAWQGRATTDTFAPVRDLCAGRGALKTP
TTPRARRRPMRVRVARPLPVGGARWAAPPEPGDESTRLLDALELELARYGVLTRGSVMTE
PQTPSFADAYRLLSRMEESGATRRGYFVTGLGGAQFATPGAVDRLRTAPAAPMRLLAACD
PVNPYGAALEWPATNGHRPARKAGALVVLDDAKPVCYVERGARTLLTFTSTDRPRLAEAL
RAIGAAVDAGQIGRLTIDKIDGSPALQADIGDELNAAGFVMVPRGYTRRRRTPGSNRQE
NT seq 4680 nt   +upstreamnt  +downstreamnt
atgacatccgacgcaacggcgcccgcgaacgatgcggcgatggccggcttcgggcccatc
gcccgcacgtggttcaccgatgtgtttgccgccccgacgccggtgcagatcgccgcctgg
caggccatcggctcgggcaacaacgcgttggtcatcgcaccaaccggttcgggtaagacc
ctggccgccttcctgcagagcctggaccggctggcatcccgtgcgacacagcccgccctg
atcggagcctccgagggggccgcaccgacgcaggagcccgccgcgcacgtcaagggcgtc
cgcgtgttgtacatctcccccctgaaggccctcgccgtggacatcgagcggaacctgcag
gcccccctgcgcggcatgacggcgactgcggagcgacttgggctacccgaaccgcgggtc
agcgttgcggtgcgctccggcgacaccacggcagcacagcgccgacgcatcgccacccat
ccccctgacatcctcatcaccacccccgaatcgctgttcctcatgttgtcgagcaaggcc
gccgagaccctgcgcaacgtcgagacggtcatcgtcgacgaggtccatgcgctggcaggc
acgaagcgcggcgcgcacctgatggtcagcctggagcgggtggccgcgctgagccaacgc
ggcggattccaacggatcggactgtcggccaccgtgcgtccaccggaacgggtcgctggc
tttctggcaggagaccgcgacatcgcggtgatcagccccccggcagccaagacctgggat
ctcagcgtcgtggtgcccgtggaggacatgaccgagcccgacgccgggcgggatgcagcc
gagcaggacggcaccggacgccaaccctcgatgtggccgccgatcgaacgacggatcctc
gacctcatcacgtcccaccgctcgaccatctgcttcgtgaattcacgtcgggtggcagag
cgcctcaccgcccacctcaacgaattgcatgcccacgatctgggcgtcagcgatgaaccg
cagccgctgccggcccaggtgatggagccgtcggcggccacgaagggccgggacggcacc
gaggtccccatcgttgcgagtgcccaccacggttcggtgagcaaacagcgtcgggcgcag
atcgaggatgacctgaagagtgggcgactgccgtgcgtggtggcgaccagctcgttggag
ctgggcatcgacatgggtgccgtggacctggtgatccaggtgcaatcgcccccctcggtg
tccagcggcctgcagcgcgtgggccgtgccggccaccaggtgggcgccatctcgcagggg
gtgctgttccccacggcgcggggggacatgctggaatcggcggtcgtcgcccgaaggatg
gccgacgggcagatcgaggccgtccacaccctgcgcaatccgctcgacgtgctggcccaa
cagctcgtgtcgatgtgcgtcaacgccccgcattcggccagcgagctcttcacgatcgtc
aggcattgcgatgccttccggcagctgccgcgctccgtcttcgacggggtgctcgacatg
ctcaccggccactatcccagtgaggacttcgccgaactgcgccccaggctggtctgggac
cgccgcacggacatgctgagcgcacgtcccggtgcccggcgcctggtgaccaccagtggt
ggcacgatccccgaccggggcctgttcggcgtgttcctggtcggcgagcaaaccgcctcg
gggaagcacgagcccggccggcgggtgggcgagctcgacgaggagatggtctacgagtca
cgggtgggcgatgtcttcaccctgggcacctcgagttggcggatcgaggacatcacccac
tcgcaggtgatggtcagtcctgctccgggccatccgggtcgattgcccttctggcgcggg
gattccccgtccaggccgcgtgagctcggagccgccatcggcgccagtgtcagggagctg
gcggctgcagatcccggggatgccctcgcccggctggcccatggggggctggatgagatg
gcctcccggaatctgctggcctatctgaccgagcagcgtgaggccaccggacagctcccc
gatgatcgcaccatcctggtcgagcgcttccgtgacgagatcggcgattggcgcctgtgc
gtgcactgtgccctgggggccgcggtgctgcagccgtgggcattgatcattgagcacgcc
ggccgcgagcgctacggcgtcgacgtccacgtcactgccaccaatgacggcatcatcatc
cagctacccgacgtcgatgccgacgctcccgacgcagggctgctgtccttcgcggccgat
gacgtcgagtcgctggtgtcagagcaggtcttcggttcagcattgttcgccgcgcggttc
cgcgagtgtgccgcccgcgcgctgctcctgccgcgccgcaatccgggcacgcgcgcaccg
ctgtggcagcaacgcatcaaatcggcacagctgcttgccgtggcggcgggataccgcgat
ttcccgatcgtcgtggagacgatgcgcgagtgcctccaggacgtctttgacctgcccggc
ctgacatccctgatgtcggccatcgcctcacggcgcgtacgactggttgacgtggagacc
caacaaccctcccccttcgcccgcaacctgctgttcggctatgtcggcgaattcgtctac
gacaccgatcagccccttgccgaacgcaccctggcggccatgagcctggattcgggcatg
ctggccgaactgttgggcaccgaggccggccgccagatgctggacgtcggggtggccacc
cgggtggaggccggcctccagtcggtggtggcggatcgtcgtgcgacaacccccgaacgc
ctgtgggaggtgattcgcacgatcgggcccctgaccgacgacgaatgccgtgatcgcagt
accccggacgccgcggcctggctgcgaaccctgtcggcagaacaccggattgcgcgggtc
cagatcaatggtcgtccggcctggtgcgccgacaccgatgtcggtctgctgcgcgatgcg
ctcggaatcccgatccctgcggccatgcccgcgccaccgccgcgtgagcggcaccttgcg
gtccgtgatctggtgctgcgctgggtgcgacgccatgcggcggtcaccaccgagtcaatc
cggcagcgctacggcatggccgttgccaccgcccaatcggcactcgacgggctgatcgat
gagggcctggtcatccggggagcgctcatcgcggttccgccgacgcccggcgaggattcg
accgaataccgtctgggcgcgctggtcggggagcccgacgccgaccagtactgtcatgag
caggtgctcgcgctgatcaagcgtcgcaccctcgcgcagctgcgcaaccaggtggaggcc
gtcgaccagcagcagttcggccgcttcctggacgcctggcagcagctgcccccggccggg
gcccaggtgccccaacgcccggcaagtcacagcgcccccacccccgacgacctgctggcc
gtcgtcgacctgatcgcgggctatccgattcccgcatccatgctggagtcggtggtgctg
ccggcgcgacttcccggctaccgcccgtccctgctcgatgaggcactcgccaccggagag
atggtctggactggaaccagggccattggccagcgggatggctggatctgcctgtggccg
gcagacatcggcccggtccctccccgggagtcgacagaactgacgcccctcgccacccga
ctggcgcaacgactggatgccggtggcggttggcgggtcaccgacctgaccgacgagtcg
gccgggccctcggccgtgctcgatgccctgtgggagcttgcgtggcagggacgtgcgacc
actgacaccttcgcgccggtgcgtgacctgtgcgcgggacgcggggccctgaagaccccc
accaccccgcgcgcacgccgtcgccccatgcgggtccgggttgcccgcccgctgcccgtg
ggcggggcccgctgggccgccccacccgagcccggcgacgagagcacccggctcctggac
gccctggagctggaactggcccgatatggcgtcctcacccggggcagcgtcatgaccgag
ccacagacaccgagcttcgccgacgcctaccgcctgctgtccaggatggaggagtccggc
gccacccgccgcggctatttcgtgaccggcctggggggagcacagttcgcgacccccggc
gcagtcgaccggctccgcaccgctccggctgcccccatgcgacttctcgctgcctgcgat
ccggtgaacccctacggtgctgccctggagtggcccgcgaccaatggacatcgtccggct
cgcaaggcgggcgccctggtggttctcgatgacgcgaagcccgtctgctacgtcgagagg
ggggcccggaccctgttgaccttcacctccaccgaccggccccgattggcggaggcactg
cgtgcaatcggtgccgccgtggacgcagggcagatcggtcgcctcacgatcgacaagatc
gatggcagtcccgccctgcaggccgacatcggcgacgagctcaatgccgcaggtttcgtg
atggttccccggggatacacccgacgccgcaggacgccggggagcaaccgccaggaatga

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