Candidatus Phytoplasma fraxini: AshY1_02530
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Entry
AshY1_02530 CDS
T10424
Name
(GenBank) DEAD/DEAH box helicase family protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pfra Candidatus Phytoplasma fraxini
Pathway
pfra03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pfra00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AshY1_02530
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pfra03019
]
AshY1_02530
03009 Ribosome biogenesis [BR:
pfra03009
]
AshY1_02530
Enzymes [BR:
pfra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AshY1_02530
Messenger RNA biogenesis [BR:
pfra03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AshY1_02530
Ribosome biogenesis [BR:
pfra03009
]
Prokaryotic type
rRNA helicases
AshY1_02530
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
Pre-PUA_NSUN2
Motif
Other DBs
NCBI-ProteinID:
WYY26384
UniProt:
A0ABZ2U7X2
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All DBs
Position
221919..223577
Genome browser
AA seq
552 aa
AA seq
DB search
MSILFKELNLLKKTEDALVELNFLQPTPIQALVIPEIIKGHDIIAQSQTGTGKTFSFGIP
IIEKIDPKIKKVQSLILCPTRELALQVFLEIQKLLKFQSAIKAIVVYGGESYIKQFQALD
TKPQIIIATPGRMIDLLERKKVELSSVKILTLDEADEMLKMGFQQAIETILSNVPKERQT
ILFSATMPRSIQEIAYKYQRSPKIVKVKQDQIVVKSIEQFYFIVKEFDKNKLLVRLLDQK
NPDSVIIFANTKRDVETILNYLQERDFLVDAIHGDLKQTQRLYVMNNFRKKNIKILVATD
VAARGIDISDIKIVINYDLPYEEEVYVHRIGRTGRAGKIGSAYTFVGLRKVFQFKKLMSY
LKEQITNLRIPTIEEVQKEQNKIFQEKILHLIDTSNKEQFQDNAFIDTLLNKKEPKEIIA
SFLKYLAPQNKNYEYIAEPKIFKNDNVKNSYVKRNNISSNFNKTNNNYNSYNKIIQKPMT
ELIINLGKDDGINPSLLLKLLREKFNIYSQNIGNIKHFYNKTIFEIPSNLAKQIQSQNNI
YYDNKLLYIQFK
NT seq
1659 nt
NT seq
+upstream
nt +downstream
nt
atgagtattttatttaaagaattaaatttattaaaaaaaaccgaagatgctttagtggaa
ttgaattttttacaacctacgcctattcaagctttggttattccagaaattataaaaggt
catgatattatagcacaatctcaaacaggaacaggtaaaactttttcttttggtattcct
atcattgaaaaaattgatccaaaaatcaaaaaagttcaatctttaatattatgtcctact
agagaattagctttacaagtttttttagaaattcaaaaattattaaaatttcaatctgca
attaaagcaattgttgtttatggtggtgagtcttatattaaacaatttcaagctttagat
acaaaaccacaaattattattgctactcccggaagaatgatagatttattagagagaaaa
aaagttgaattatcttcagttaaaatattgactttagatgaagctgatgaaatgttaaaa
atgggttttcaacaagctatcgaaactattttatctaacgttcctaaagaaagacaaaca
attttattttcagctacgatgccacgttctattcaagagatagcttataaatatcaacga
agtcctaaaattgttaaagttaaacaagatcaaattgttgttaaatctattgaacaattt
tattttattgtgaaagaatttgataaaaataaattattagtacgtcttttagatcaaaaa
aatcctgattcagtaattatttttgctaatacaaaaagagatgttgaaacaattttgaat
tatttacaagaaagagattttttagtagacgctattcatggggatttgaaacaaactcaa
agactttatgttatgaacaattttagaaaaaaaaatattaaaattttagttgctacagat
gtagccgctagaggtatagatatttctgatattaaaatagtgattaattatgatttgcct
tatgaagaagaagtttatgtacatagaattgggagaacaggaagagcaggcaaaataggt
tcagcttacacttttgttggtttaagaaaagtttttcaatttaaaaaattaatgtcttat
ttaaaagaacaaattactaatttaagaattccaacaatagaagaagttcaaaaagaacaa
aataaaatttttcaagaaaaaattttacatttaatagatacttcaaacaaagaacaattt
caagataatgcttttattgatacattattaaacaaaaaagaacctaaagaaattattgct
tcttttttaaaatatttagcacctcaaaataaaaattatgaatatatagcggaacctaaa
atatttaaaaatgataatgtgaaaaattcttatgttaaaagaaataatatatcatccaat
tttaataaaacgaataataactataatagttataataaaataatccaaaaaccgatgaca
gaattaattattaatttaggtaaggatgatggcatcaatccttctttgcttttaaaatta
ttaagagaaaaatttaatatttatagtcaaaatatcggtaatattaagcatttttataat
aaaactattttcgaaattccttctaatttggctaaacaaattcagtctcaaaataatatt
tattacgataataagctattatatatacaatttaaataa
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