Propionibacterium freudenreichii subsp. freudenreichii DSM 20271: RM25_0129
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Entry
RM25_0129 CDS
T03860
Name
(GenBank) DNA-formamidopyrimidine glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
pfre
Propionibacterium freudenreichii subsp. freudenreichii DSM 20271
Pathway
pfre03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
pfre00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
RM25_0129
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pfre03400
]
RM25_0129
Enzymes [BR:
pfre01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
RM25_0129
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
RM25_0129
DNA repair and recombination proteins [BR:
pfre03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
RM25_0129
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
H2TH
Fapy_DNA_glyco
zf-FPG_IleRS
NFACT_N
Zn_ribbon_TFIIB
Ribosomal_S13
Auto_anti-p27
DUF7577
Motif
Other DBs
NCBI-ProteinID:
AJQ89864
UniProt:
A0A068VUB7
LinkDB
All DBs
Position
158834..159697
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AA seq
287 aa
AA seq
DB search
MPELPQVEALADFLRTDLVGSVIERLEVGAISALKTFDPPPDALVGRTVTAINRFGKHLD
VDAGGLHLVFHLARAGWLVWREKVPSTVIKPGKSRIALRVRLQGGAGFDLTEAGTQRKLA
VWIVRDPQQVPSIASLGPDPMAPGFTPAVFRQILAGAGRAQLKGILRDQHVIAGIGNAYS
DEILHDAKLSPFKPAANLTDDEVERLYAAIRDGLAAATERARGLAARDIKADKRAQLRIH
GHAGDPCPVCGTPIASVNFADSSLQYCPVCQTGGKKLADRRMSKLLK
NT seq
864 nt
NT seq
+upstream
nt +downstream
nt
atgcctgagctgccccaggtggaggccctggccgatttcctgcgcaccgatctggtgggt
tcggtgatcgaacgcctcgaggtgggcgcgatcagcgcgctgaagacctttgacccgccg
cccgatgcgctggtgggccgcaccgtcaccgccatcaaccgcttcggcaagcacctcgac
gtggatgccgggggcctgcacctggtgttccacctggcgcgggccggctggctggtgtgg
cgcgagaaggtgccgtccaccgtgatcaagccgggcaagagccgcatcgcgctgcgggtg
cggctgcagggtggcgccggcttcgacctcaccgaggccggcacgcaacgcaagctggcc
gtgtggatcgtgcgcgacccccagcaggtgccgtcgatcgccagcctggggcccgatccg
atggcgcccgggttcacgccggcggtgttccggcagatcctggcaggggccgggcgcgcc
cagttgaagggcatcctgcgtgaccagcacgtgattgccggcatcggcaacgcctacagc
gacgagatcctgcacgatgcaaagttgagccccttcaagccggccgccaacctgaccgat
gacgaggtcgagcggctgtatgccgccatccgcgacggcctggccgccgccaccgagcgg
gcgcgggggttggccgccagggacatcaaggccgacaagcgcgcccagctgcgcatccat
ggccatgccggcgatccctgccccgtgtgcggcacgccgatcgcgtcggtgaacttcgcc
gactcgtcgctgcagtactgcccggtgtgccagaccggcggcaagaagctggccgatcgg
cgcatgagcaagctgctcaaatag
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