Propionibacterium freudenreichii subsp. freudenreichii DSM 20271: RM25_0677
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Entry
RM25_0677 CDS
T03860
Name
(GenBank) DNA-formamidopyrimidine glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
pfre
Propionibacterium freudenreichii subsp. freudenreichii DSM 20271
Pathway
pfre03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
pfre00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
RM25_0677
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pfre03400
]
RM25_0677
Enzymes [BR:
pfre01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
RM25_0677
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
RM25_0677
DNA repair and recombination proteins [BR:
pfre03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
RM25_0677
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
H2TH
Fapy_DNA_glyco
zf-FPG_IleRS
Motif
Other DBs
NCBI-ProteinID:
AJQ90404
LinkDB
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Position
complement(791012..791827)
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AA seq
271 aa
AA seq
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MPEGHVLHGLAARFNELFADEQVQVSSPQGRFAESAALIDGSTLVQAQAWGKHLFVRFDA
PIADPIVHIHLGLIGKLSFTELAPPVGQVRVRINDGTWAADLRGPQICRLISEDEEAAAT
KKLGADPLRSDSDPERAWTKVHRSGKPIASLLMNQAIFAGVGNIYRAEVLFRHRIDPQCP
GNKLHRASFDLMWNDLVQLMRLGVRDGRIDTVYPEHTPEALGRPPRVDAHGGEVYVYRRA
DQPCLVCGSPIHETTLEGRHLFWCGRCQRRH
NT seq
816 nt
NT seq
+upstream
nt +downstream
nt
atgcctgagggacacgtactgcacggacttgccgcacgattcaatgagctgttcgccgac
gaacaggtgcaggtgagctccccgcagggccgcttcgccgagtcggccgcactgatcgat
ggcagcaccctggtgcaggcccaggcatggggcaagcacctgttcgtgcgcttcgacgca
ccgattgccgatcccatcgtgcacatccacctggggctcatcggcaagctgtcgttcacc
gagctggcgccgccggtgggccaggtgcgcgtgcgcatcaatgacggcacctgggccgca
gacctgcgcgggccccagatctgccggctcatctccgaggacgaggaggcggccgccacc
aagaagttgggcgccgacccgctgcgcagcgactccgatcccgaacgggcctggacgaag
gtgcaccgctcgggcaagcccatcgcgtcgctgctgatgaaccaggcgatcttcgccggc
gtcggcaacatctaccgggccgaggtgctgttccgtcatcgcattgacccccagtgcccc
ggcaacaagctccaccgggcgagcttcgacctgatgtggaacgacctcgtgcagctgatg
cgcctgggggtccgtgacgggcgcatcgacaccgtctatcccgaacacacccccgaggcg
ctggggcgcccgccgcgcgtcgacgcccatgggggcgaggtctatgtctaccgtcgcgcc
gaccagccatgcctggtgtgcggctcgccgatccacgagaccacccttgagggacgccac
ctgttctggtgcggacgctgccagcgacgtcactga
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