Propionibacterium freudenreichii subsp. freudenreichii DSM 20271: RM25_0753
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Entry
RM25_0753 CDS
T03860
Name
(GenBank) Oligoribonuclease
KO
K13288
oligoribonuclease [EC:3.1.-.-]
Organism
pfre
Propionibacterium freudenreichii subsp. freudenreichii DSM 20271
Pathway
pfre03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
pfre00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
RM25_0753
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pfre03019
]
RM25_0753
03009 Ribosome biogenesis [BR:
pfre03009
]
RM25_0753
Messenger RNA biogenesis [BR:
pfre03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
RM25_0753
Ribosome biogenesis [BR:
pfre03009
]
Eukaryotic type
Pre-60S particles
RNases
RM25_0753
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Rv2179c-like
PDDEXK_3
Motif
Other DBs
NCBI-ProteinID:
AJQ90479
LinkDB
All DBs
Position
complement(871199..871879)
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AA seq
226 aa
AA seq
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MKDMLVWIDCEMTGLDLANDELIEVACLVTDGELNVQGDGIDVLVQPSKHALDHMGEFVT
EMHTKSGLLAELKNVKTTMREAEEQVLAYIKKYVPTERKAPLAGNTIGTDRTFLAKDMPE
LEAWVHYRNVDVSSIKELAKRWYPRTYYQAPDKHGNHRALADIQESIEELKYFRAAIMVP
EPGPTASEARALAHKYQGSLTGFSDPDEPPEADFAGEPDTGSASKD
NT seq
681 nt
NT seq
+upstream
nt +downstream
nt
atgaaagacatgctcgtgtggatcgactgcgaaatgacggggcttgaccttgccaacgac
gaactgattgaggttgcctgtctggtcacagacggcgaactcaatgtgcagggcgatggc
attgatgtgctcgtccagcccagcaaacacgccctcgaccatatgggtgagttcgtgacc
gagatgcacaccaagtcgggtctgctcgcggagctgaagaacgtgaagacgacgatgcgc
gaggccgaggagcaggtgctcgcctacatcaagaagtacgtgcccaccgagcgcaaggcg
ccgctggccggcaacacgatcggcaccgaccgcaccttcctggccaaggacatgcccgag
ctcgaggcctgggtgcactaccgcaatgtggacgtgagctcgatcaaggagctcgccaag
cgctggtacccgcgcacctactaccaggcccccgacaagcacggcaaccatcgtgcgctg
gccgacatccaggaatcgatcgaggagttgaagtacttccgcgccgcgatcatggttccc
gagcccggccccacggcgtccgaggcacgtgcgctcgcccacaagtaccagggcagcctc
accggattctcggaccccgacgagccgcccgaggccgatttcgccggcgagcccgacacc
ggttcggcttccaaggactga
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