KEGG   Propionibacterium freudenreichii subsp. freudenreichii DSM 20271: RM25_0880
Entry
RM25_0880         CDS       T03860                                 
Name
(GenBank) Putative ATP-DEPENDENT HELICASE LHR
  KO
K03724  ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
Organism
pfre  Propionibacterium freudenreichii subsp. freudenreichii DSM 20271
Brite
KEGG Orthology (KO) [BR:pfre00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pfre03400]
    RM25_0880
Enzymes [BR:pfre01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     RM25_0880
    5.6.2.6  RNA 3'-5' helicase
     RM25_0880
DNA repair and recombination proteins [BR:pfre03400]
 Prokaryotic type
  Other factors with a suspected DNA repair function
   DNA helicases
    RM25_0880
SSDB
Motif
Pfam: DEAD_assoc WH_Lhr DEAD WH4_Lhr WH3_Lhr WH2_Lhr Helicase_C ResIII DUF6406 MarR_2 Vexin
Other DBs
NCBI-ProteinID: AJQ90602
LinkDB
Position
complement(1015068..1019840)
AA seq 1590 aa
MPSAVIPLAPPRRVRGVAHSKMSVPRVRLAPMTSDATAPANDAAMAGFGPIARTWFTDVF
AAPTPVQIAAWQAIGSGNNALVIAPTGSGKTLAAFLQSLDRLASRATQPALIGASEGAAP
TQEPAAHVKGVRVLYISPLKALAVDIERNLQAPLRGMTATAERLGLPEPRVSVAVRSGDT
TAAQRRRIATHPPDILITTPESLFLMLSSKAAETLRNVETVIVDEVHALAGTKRGAHLMV
SLERVAALSQRGGFQRIGLSATVRPPERVAGFLAGDRDIAVISPPAAKTWDLSVVVPVED
MTEPDAGRDAAEQDGTGRQPSMWPPIERRILDLITSHRSTICFVNSRRVAERLTAHLNEL
HAHDLGVSDEPQPLPAQVMEPSAATKGRDGTEVPIVASAHHGSVSKQRRAQIEDDLKSGR
LPCVVATSSLELGIDMGAVDLVIQVQSPPSVSSGLQRVGRAGHQVGAISQGVLFPTARGD
MLESAVVARRMADGQIEAVHTLRNPLDVLAQQLVSMCVNAPHSASELFTIVRHCDAFRQL
PRSVFDGVLDMLTGHYPSEDFAELRPRLVWDRRTDMLSARPGARRLVTTSGGTIPDRGLF
GVFLVGEQTASGKHEPGRRVGELDEEMVYESRVGDVFTLGTSSWRIEDITHSQVMVSPAP
GHPGRLPFWRGDSPSRPRELGAAIGASVRELAAADPGDALARLAHGGLDEMASRNLLAYL
TEQREATGQLPDDRTILVERFRDEIGDWRLCVHCALGAAVLQPWALIIEHAGRERYGVDV
HVTATNDGIIIQLPDVDADAPDAGLLSFAADDVESLVSEQVFGSALFAARFRECAARALL
LPRRNPGTRAPLWQQRIKSAQLLAVAAGYRDFPIVVETMRECLQDVFDLPGLTSLMSAIA
SRRVRLVDVETQQPSPFARNLLFGYVGEFVYDTDQPLAERTLAAMSLDSGMLAELLGTEA
GRQMLDVGVATRVEAGLQSVVADRRATTPERLWEVIRTIGPLTDDECRDRSTPDAAAWLR
TLSAEHRIARVQINGRPAWCADTDVGLLRDALGIPIPAAMPAPPPRERHLAVRDLVLRWV
RRHAAVTTESIRQRYGMAVATAQSALDGLIDEGLVIRGALIAVPPTPGEDSTEYRLGALV
GEPDADQYCHEQVLALIKRRTLAQLRNQVEAVDQQQFGRFLDAWQQLPPAGAQVPQRPAS
HSAPTPDDLLAVVDLIAGYPIPASMLESVVLPARLPGYRPSLLDEALATGEMVWTGTRAI
GQRDGWICLWPADIGPVPPRKSTELTPLATRLAQRLDAGGGWRVTDLTDESAGPSAVLDA
LWELAWQGRATTDTFAPVRDLCAGRGALKTPTTPRARRRPMRVRVARPLPVGGARWAAPP
EPGDESTRLLDALELELARYGVLTRGSVMTEPQTPSFADAYRLLSRMEESGATRRGYFVT
GLGGAQFATPGAVDRLRTAPAAPMRLLAACDPVNPYGAALEWPATNGHRPARKAGALVVL
DDAKPVCYVERGARTLLTFTSTDRPRLAEALRAIGAAVDAGQIGRLTIDKIDGSPALQAD
IGDELNAAGFVMVPRGYTRRRRTPGSNRQE
NT seq 4773 nt   +upstreamnt  +downstreamnt
gtgccctccgccgtcatcccgctggcccccccgcgccgggtgcgcggcgtcgcccattcg
aaaatgtcagtgccccgcgtcagactggctcccatgacatccgacgcaacggcgcccgcg
aacgatgcggcgatggccggcttcgggcccatcgcccgcacgtggttcaccgatgtgttt
gccgccccgacgccggtgcagatcgccgcctggcaggccatcggctcgggcaacaacgcg
ttggtcatcgcaccaaccggttcgggtaagaccctggccgccttcctgcagagcctggac
cggctggcatcccgtgcgacacagcccgccctgatcggagcctccgagggggccgcaccg
acgcaggagcccgccgcgcacgtcaagggcgtccgcgtgttgtacatctcccccctgaag
gccctcgccgtggacatcgagcggaacctgcaggcccccctgcgcggcatgacggcgact
gcggagcgacttgggctacccgaaccgcgggtcagcgttgcggtgcgctccggcgacacc
acggcagcacagcgccgacgcatcgccacccatccccctgacatcctcatcaccaccccc
gaatcgctgttcctcatgttgtcgagcaaggccgccgagaccctgcgcaacgtcgagacg
gtcatcgtcgacgaggtccatgcgctggcaggcacgaagcgcggcgcgcacctgatggtc
agcctggagcgggtggccgcgctgagccaacgcggcggattccaacggatcggactgtcg
gccaccgtgcgtccaccggaacgggtcgctggctttctggcaggagaccgcgacatcgcg
gtgatcagccccccggcagccaagacctgggatctcagcgtcgtggtgcccgtggaggac
atgaccgagcccgacgccgggcgggatgcagccgagcaggacggcaccggacgccaaccc
tcgatgtggccgccgatcgaacgacggatcctcgacctcatcacgtcccaccgctcgacc
atctgcttcgtgaattcacgtcgggtggcagagcgcctcaccgcccacctcaacgaattg
catgcccacgatctgggcgtcagcgatgaaccgcagccgctgccggcccaggtgatggag
ccgtcggcggccacgaagggccgggacggcaccgaggtccccatcgttgcgagtgcccac
cacggttcggtgagcaaacagcgtcgggcgcagatcgaggatgacctgaagagtgggcga
ctgccgtgcgtggtggcgaccagctcgttggaactgggcatcgacatgggtgccgtggac
ctggtgatccaggtgcaatcgcccccctcggtgtccagcggcctgcagcgcgtgggccgt
gccggccaccaggtgggcgccatctcgcagggggtgctgttccccacggcgcggggggac
atgctggaatcggcggtcgtcgcccgaaggatggccgacgggcagatcgaggccgtccac
accctgcgcaatccgctcgacgtgctggcccaacagctcgtgtcgatgtgcgtcaacgcc
ccgcattcggccagcgagctcttcacgatcgtcaggcattgcgatgccttccggcagctg
ccgcgctccgtcttcgacggggtgctcgacatgctcaccggccactatcccagtgaggac
ttcgccgaactgcgccccaggctggtctgggaccgccgcaccgacatgctgagcgcacgt
cccggtgcccggcgcctggtgaccaccagtggtggcacgatccccgaccggggcctgttc
ggcgtgttcctggtcggcgagcaaaccgcctcggggaagcacgagcccggccggcgggtg
ggcgagctcgacgaggagatggtctacgagtcacgggtgggcgatgtcttcaccctgggc
acctcgagttggcggatcgaggacatcacccactcgcaggtgatggtcagtcctgctccg
ggccatccgggtcgattgcccttctggcgcggggattccccgtccaggccgcgtgagctc
ggagccgccatcggcgccagtgtcagggagctggcggcggcagatcccggggatgccctc
gcccggctggcccatggggggctggatgagatggcctcccggaatctgctggcctatctg
accgagcagcgtgaggccaccggacagctccccgatgatcgcaccatcctggtcgagcgc
ttccgtgacgagatcggcgattggcgcctgtgcgtgcactgtgccctgggggccgcggtg
ctgcagccgtgggcattgatcattgagcacgccggccgcgagcgctacggcgtcgacgtc
cacgtcactgccaccaatgacggcatcatcatccagctacccgacgtcgatgccgacgct
cccgacgcagggctgctgtccttcgcggccgatgacgtcgagtcgctggtgtcagagcag
gtcttcggttcagcattgttcgccgcgcggttccgcgagtgtgccgcccgcgcgctgctc
ctgccgcgccgcaatccgggcacgcgcgcaccgctgtggcagcaacgcatcaaatcggca
cagctgcttgccgtggcggcgggataccgcgatttcccgatcgtcgtggagacgatgcgc
gagtgcctccaggacgtctttgacctgcccggcctgacatccctgatgtcggccatcgcc
tcacggcgcgtacgactggttgacgtggagacccaacaaccctcccccttcgcccgcaac
ctgctgttcggctatgtcggcgaattcgtctacgacaccgatcagccccttgccgaacgc
accctggcggccatgagcctggattcgggcatgctggccgaactgttgggcaccgaggcc
ggccgccagatgctggacgtcggggtggccacccgggtggaggccggcctccagtcggtg
gtggcggatcgtcgtgcgacaacccccgaacgcctgtgggaggtgattcgcacgatcggg
cccctgaccgacgacgaatgccgtgatcgcagtaccccggacgccgcggcctggctgcga
accctgtcggcagaacaccggattgcgcgggtccagatcaatggtcgtccggcctggtgc
gccgacaccgatgtcggtctgctgcgcgatgcgctcggaatcccgatccctgcggccatg
cccgcgccaccgccgcgtgagcggcaccttgcggtccgtgatctggtgctgcgctgggtg
cgacgccatgcggcggtcaccaccgagtcaatccggcagcgctacggcatggccgttgcc
accgcccaatcggcactcgacgggctgatcgatgagggcctggtcatccggggagcgctc
atcgcggttccgccgacgcccggcgaggattcgaccgaataccgtctgggcgcgctggtc
ggggagcccgacgccgaccagtactgtcatgagcaggtgctcgcgctgatcaagcgtcgc
accctcgcgcagctgcgcaaccaggtggaggccgtcgaccagcagcagttcggccgcttc
ctggacgcctggcagcagctgcccccggccggggcccaggtgccccaacgcccggcaagt
cacagcgcccccacccccgacgacctgctggccgtcgtcgacctgatcgcgggctatccg
attcccgcatccatgctggagtcggtggtgctgccggcgcgacttcccggctaccgcccg
tccctgctcgatgaggcactcgccaccggagagatggtctggactggaaccagggccatt
ggccagcgggatggctggatctgcctgtggccggcagacatcggcccggtccctccccgg
aagtcgacagaactgacgcccctcgccacccgactggcgcaacgactggatgccggtggc
ggttggcgggtcaccgacctgaccgacgagtcggccgggccctcggccgtgctcgatgcc
ctgtgggagcttgcgtggcagggacgtgcgaccactgacaccttcgcgccggtgcgtgac
ctgtgcgcgggacgcggggccctgaagacccccaccaccccgcgcgcacgccgtcgcccc
atgcgggtccgggttgcccgcccgctgcccgtgggcggggcccgctgggccgccccaccc
gagcccggcgacgagagcacccggctcctggacgccctggagctggaactggcccgatat
ggcgtcctcacccggggcagcgtcatgaccgagccacagacaccgagcttcgccgacgcc
taccgcctgctgtccaggatggaggagtccggcgccacccgccgcggctatttcgtgacc
ggcctggggggagcacagttcgcgacccccggcgcagtcgaccggctccgcaccgctccg
gctgcccccatgcgacttctcgctgcctgcgatccggtgaacccctacggtgctgccctg
gagtggcccgcgaccaatggacatcgtccggctcgcaaggcgggcgccctggtggttctc
gatgacgcgaagcccgtctgctacgtcgagaggggggcccggaccctgttgaccttcacc
tccaccgaccggccccgattggcggaggcactgcgtgcaatcggtgccgccgtggacgca
gggcagatcggtcgcctcacgatcgacaagatcgatggcagtcccgccctgcaggccgac
atcggcgacgagctcaatgccgcaggtttcgtgatggttccccggggatacacccgacgc
cgcaggacgccggggagcaaccgccaggaatga

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