Propionibacterium freudenreichii subsp. freudenreichii DSM 20271: RM25_0902
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Entry
RM25_0902 CDS
T03860
Name
(GenBank) ATP-dependent helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
pfre
Propionibacterium freudenreichii subsp. freudenreichii DSM 20271
Brite
KEGG Orthology (KO) [BR:
pfre00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pfre03019
]
RM25_0902
Enzymes [BR:
pfre01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
RM25_0902
Messenger RNA biogenesis [BR:
pfre03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
RM25_0902
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
AAA_22
NACHT
T2SSE
nSTAND3
AAA_30
AAA_23
HA2_N
AAA_25
SLFN-g3_helicase
Motif
Other DBs
NCBI-ProteinID:
AJQ90624
LinkDB
All DBs
Position
1048147..1052115
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AA seq
1322 aa
AA seq
DB search
MSQPSSTAVEPQLSYDPALPISAHVDQIAGLIRDHQVVIVAGETGSGKTTQLPKICLGIG
RRHIGHTQPRRIAARTVAERLAEEMHVPLGDTVGYQVRFTKQVGRNTAVKVMTDGVLLAE
INHDRTLRRYDTLIIDEAHERSLNIDFLLGYLKQLLPRRRDLKVIITSATIDTQRFAEHF
SDAHGRPAPIVEVSGRSYPVEMRYRPLGPEGTDEGDEDISGGIVQAVRELGPTGDVLVFL
SGEREIKDADKALRDARLANTEIMPLFARLSAAEQHRVFQAHTGRRVILATNIAETSLTV
PGIMFVVDTGLARISRYSARTKVQRLPIEEISRASADQRAGRCGRIAPGICIRLYSEEDY
LARPEFTEPEILRTNLASVILKMAQADLGNIETFPFLEAPDRAQIRDGLRLLEELGALAA
PGAGGEATGGRGQAAPSGKRARGHKQLRLTRTGHRLAELPIDPRLGRMLIEGAKRGCLRE
VEVIVSALAIQDVRERPVEKREQADQLHRRFFSDDILKPGGHAQPAGESGSPRRYTAHTG
RAGEFDKAPIGPSGDIIAITRLWRYLKMQRKELSGNQFRRRCRAEFINFLRVREWQDLRT
QLRQIDKELKLNRNERAGDVDQVLISVLSGLLSHIGLLEQKTTRKDTRRRGTKQRRASNE
YLGARGSRFAIQPGSALSKQPPELLMAVELVETSRLWARTVAEVQAEWIEQVGAHQLRHN
YSEPHWSSSAAGVLAYERVTLYGVPIIADRLADYARVDPQVARDIFIRSGLVEDGWVPDD
THAPHDFLEHNRQVRAQVEELEERTRRHDLLVDDQTIFDFYDERIPADVHSAASFDAWWS
RQADHHLLDLDVEAMMRPDADGVDGSSFPDHWQVGELKFPVSYVFDPGSGSDGVTVTIPL
AQLNQVSAQPFSWQVPGLRGELATELIRSLPKSVRTNFVPAPDRAREALRWLRAHEPDRN
AWFHDELGRALRAITSVPVASTDWNPRAVSGHLQVSFQVTDAGRVVRTGKDLTAIRDELA
ATVTRTLTAATNRASTPTGTTWVFGAIDPVRQITRQGLTVKGYPALRDDGNSVSLVTTQT
PADQARSHRAGVRRLLLLAGPDPTKWVVARIGRDQMLWLSSSPYESMSVLLADARLKAVG
QSAERFTDPAGVRDEADFDKLLVEVRQVQADQMRSVVDTTARALSWARQVRADLANAPRP
TADDVGAQVDNLVFPGFISFTRDPWFAHLPRYLQGASLRLDAAAANPARDAQSQEIIDEL
LAEYDELCDAQPSGPLPDAVDDIGFAIEELRVQLFAQRLGTSQPVSPKRIRKMIARVRGA
DA
NT seq
3969 nt
NT seq
+upstream
nt +downstream
nt
atgtcccagccctccagcactgccgttgagccacagctgtcctacgatcccgccctgccc
atcagtgcccacgtcgaccagatcgccgggctgatccgcgatcaccaggtggtgatcgtg
gcgggggagacgggctcgggcaagaccacccagctcccgaagatctgcctcgggatcggt
cgtcgccacatcgggcacacgcagccgaggaggatcgccgcacgtacggtcgcggagcgg
ctggccgaggagatgcacgttcccctgggcgacaccgtgggctatcaggtgcgcttcacc
aagcaggtggggcgcaatacggccgtgaaggtgatgaccgatggcgtgctgttggccgag
atcaaccacgaccgcaccctgcggcgctatgacaccctcatcatcgatgaggcccatgaa
cgcagcctgaacattgacttcctgctgggctatctcaagcagctgttgccgcgacgtcgt
gacctgaaggtgatcatcacctcggccaccatcgacacccaacgatttgccgagcacttc
tcggatgcgcacggaaggcctgcccccatcgtggaggtctcgggccgcagctatccggtg
gagatgcgctaccgtccgctgggtcccgagggcaccgacgagggcgacgaggacatctcg
ggtggcatcgtgcaggccgtgcgggagcttggccccaccggcgatgtgctggtcttcctg
tcgggcgagcgcgagatcaaggatgccgacaaggccctgcgcgacgcccgcctggccaac
accgagataatgcccctgttcgcccggctctcggccgccgaacagcaccgcgtcttccag
gcccacaccggccggcgtgtcatccttgccacgaacatcgccgagacctccctgacggtg
cccgggatcatgttcgtggtcgataccggcctggcccgcatctcgcgctattcggcgcgc
acgaaggtgcaacggcttcccatcgaggagatcagccgggccagcgccgaccagcgcgcg
gggcggtgcgggcgcatcgccccgggtatttgcatccggctgtactcggaggaggactac
ctcgcccgtcccgaattcaccgaaccggagatcctgcgaaccaaccttgcctcggtcatc
ctcaagatggcccaggccgacctcggcaacatcgagaccttccccttcctggaggcacct
gaccgcgcacagatccgcgacggcctgcgcctgctcgaggaactcggggccctggcggcg
cccggggcgggcggcgaggcgacggggggacgcgggcaggcggcgccgtccggcaagagg
gccaggggacacaagcagctgcgactgacccgcacgggccatcgactggccgagctgccg
atcgacccccgactggggcgcatgctcatcgagggtgccaagcgtggctgcctgcgcgag
gtggaggtcatcgtgtcggcgctggcgatccaggacgtgcgcgagcgtcccgtggagaag
cgcgaacaggccgatcaactccaccgtcgcttcttctccgacgacatcctcaagcccggc
ggccatgcgcagccggcgggcgagtcggggagccccaggcgttacacggcgcacaccgga
cgggccggggagttcgacaaggcacccatcggccctagcggcgacatcatcgccatcacg
aggctgtggcgctacctgaagatgcagcgcaaggaactgtccggaaaccaattccgacgc
cgatgccgcgcagaattcatcaacttcctcagggtccgcgaatggcaggacctgcgcacc
caactgcgccagatcgacaaggaactcaagctcaaccgcaatgagcgggccggtgacgtg
gaccaggtgctcatctcggtgctgtcgggcctgctgtcccatattggcctgctcgagcag
aagaccacccgcaaggacacccgccgtcgtggcaccaagcagcggcgcgcctcgaacgaa
tacctgggggcacgcggctcgcgcttcgcgatccagcccggatcggccctgtcgaagcag
ccaccagagctgttgatggccgtcgagctcgtggagaccagccggctgtgggcccgcacg
gtggccgaggtgcaggccgaatggatcgaacaggtgggcgcccaccagctgcgccacaac
tattccgagccccactggtcgtccagcgcggcaggagtcctggcctacgagcgggtgacc
ctgtacggggtgccgatcatcgccgaccgcctggccgactatgcccgggtcgacccgcag
gtggcccgcgacatcttcatccgctcgggactcgtcgaggatggctgggtccccgacgac
acccatgccccgcatgatttcctggagcacaaccggcaggtgcgcgcccaggtggaggaa
ctcgaggaacgcacccggcgccacgatctgctcgtggacgaccagacgatcttcgacttc
tatgacgagcgcatcccggccgatgtgcactcggcagcaagctttgacgcgtggtggtca
cggcaggccgaccaccacctgctcgacctcgacgtcgaggcgatgatgcgccccgacgcg
gacggcgtggacgggtcctcgttccccgaccactggcaggtcggcgagctgaagttcccg
gtgagctatgtcttcgaccccggctccggatccgatggcgtcacggtgaccatcccgctg
gcacagctcaaccaggtgagcgcccagccgttcagctggcaggttccgggccttcgtggt
gagctggccaccgagctgatccgctccctgcccaagtcggtgcgcacgaatttcgtgccg
gcgccggatcgtgcccgcgaggccctgcgttggttgcgcgcccacgagccggatcgcaat
gcctggttccatgacgagctcggccgtgccctgcgggcgatcacgtcggtgccggtggca
tcgacggactggaatccgcgggccgtgtcgggacacctgcaggtgagcttccaggtcacc
gacgctggtcgcgtcgtgcgcaccggcaaggacctcacggcgatccgtgacgagctggcc
gccacggtgaccaggacactcacggccgccaccaacagggcgagcacccccactggcacc
acctgggtgttcggcgccatcgatcccgtgcggcagatcacgcgccaggggctcaccgtg
aagggctatccggcgctgcgcgacgacggcaactcggtctcgctggtcaccacgcagacg
cccgctgaccaggcgcgcagccaccgggccggggtgcggcgcctcctgctgctcgccgga
cctgatcccaccaagtgggtggtcgcccggatcggccgcgaccagatgctgtggttgagc
tccagcccctatgaatcgatgtcggtgctgcttgccgacgcccgcctcaaggcggtcgga
cagtcggctgagcgcttcaccgacccggccggggtgcgcgacgaggccgatttcgacaag
ctgctggtcgaggtgcggcaggtacaggccgatcagatgcgctccgtggtggacaccact
gcccgggccctgtcctgggcgcggcaggtgcgggccgacctggcgaatgcgccgcgtccc
accgccgacgacgtgggcgcccaggtggacaacctggtgtttcccggcttcatctccttc
acgcgcgacccgtggttcgcccacctgccccgctacctacagggggcctccctgcgcctg
gatgcggccgccgcgaatccggcacgcgatgcgcagtcgcaggagatcatcgatgagctg
ttggccgaatacgacgagttgtgcgatgcgcagccctcggggccccttcccgatgcggtg
gacgacatcggcttcgcgatcgaggagcttcgggtgcaattgttcgcccagcgactgggc
accagccagccggtgtcacccaagcgcatccgcaagatgatcgcccgggtgcgaggggcc
gacgcctga
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