KEGG   Propionibacterium freudenreichii subsp. freudenreichii DSM 20271: RM25_0937
Entry
RM25_0937         CDS       T03860                                 
Name
(GenBank) 3'-5' exonuclease
  KO
K03684  ribonuclease D [EC:3.1.13.5]
Organism
pfre  Propionibacterium freudenreichii subsp. freudenreichii DSM 20271
Brite
KEGG Orthology (KO) [BR:pfre00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:pfre03016]
    RM25_0937
Enzymes [BR:pfre01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.5  ribonuclease D
     RM25_0937
Transfer RNA biogenesis [BR:pfre03016]
 Prokaryotic type
  3'processing and CCA adding factors
   3'processing factors
    RM25_0937
SSDB
Motif
Pfam: DNA_pol_A_exo1 DNA_pol_A_exoN HRDC PSME4_C Phasin_2
Other DBs
NCBI-ProteinID: AJQ90659
LinkDB
Position
complement(1089624..1090889)
AA seq 421 aa
MPILAMPHEGLPELVDSPEALTRCIEALASGTGPVAIDTERAQSFRYTARAYLLQFRRTD
SGTWLIDPQAFQPSDGSLADFSALREAIASAEWIIHAATQDLPCLVEIGLYPSRLFDTEL
AGRLLGFPRVSLGTMIEQHFGVHLLKEHSAADWSRRPLPPDWIAYAALDVELLIELRNLV
ADELVAAGKKEWADEEFAHLVDVYRHPQQRPGDPWRHTSGSHHVRSRRGLALVRALWEQR
DEIARELDKAPGKIVPDKAISELASEVTKDSEKMPTARDMNKIMGFRRTYAKRYRDRWVA
ASQQVGQLSAKQLPPMRVPHEGPPHQAHSWQRTHPEAWARWQVVRPAANEIAEQIGMPPE
NLIQPEALRWLVWKPLPQINEQAVRARLSEHGVRHWQQDLLAARFAELLAAVPGPGDGSS
A
NT seq 1266 nt   +upstreamnt  +downstreamnt
atgcccatccttgccatgccccatgagggactccccgagttggttgactcccccgaggca
ctgacgcgctgcatcgaggcgctcgcctccggtaccggtccggtggccatcgacacggaa
cgcgcccagagcttccggtacacggcccgggcctatctcctgcaattccgtcgcaccgac
tcgggcacctggctgatcgatccgcaggccttccagccctccgacgggagcctcgccgat
ttctctgcgctcagggaggcgatcgcatcggccgaatggatcatccatgccgccacccag
gacctcccctgcctggtggagatcgggctgtatcccagccggctgttcgacaccgagctg
gccgggcggctcctcggtttcccgcgcgtgagcctgggcaccatgatcgaacagcatttc
ggggtgcacctcctcaaggagcattccgccgccgactggtcgcggcgtccgctgcccccc
gactggattgcctatgcggcactggacgtggagctgctcatcgagttgcgcaacctcgtg
gccgatgagctcgtggcggccgggaagaaggaatgggccgacgaggagttcgcccacctg
gtggatgtctaccggcacccccagcagcgtcccggcgatccctggcggcacaccagcggc
agtcatcatgtccgctcacgtcgcggactggcattggtgcgcgccctgtgggagcagcgc
gatgagattgcccgcgaactggacaaggcaccgggaaagatcgtgcccgacaaggccatc
agcgaactcgcctccgaggtgaccaaggactcggagaagatgccgacggcccgcgacatg
aacaagatcatgggctttcgacgcacctatgcaaagcgctaccgcgaccggtgggtcgcg
gcgtcacagcaggtcggccagctgtccgccaagcaactgccgcccatgcgggtgccccat
gaggggccgccccaccaggcgcattcatggcagcggacccacccggaggcctgggcccgt
tggcaggtggtgcgtcccgcggcgaatgaaatcgccgagcagatcggaatgccaccggag
aacctgatccagcccgaagcgctgcgctggctggtctggaagccactgccgcagatcaac
gagcaggccgtccgcgcgcggctctccgagcacggcgtgcggcattggcagcaggacctg
ttggcagcgcggttcgccgagctgctggccgcggtacccggcccgggtgacggcagcagc
gcatag

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