Propionibacterium freudenreichii subsp. freudenreichii DSM 20271: RM25_1455
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Entry
RM25_1455 CDS
T03860
Name
(GenBank) DNA-directed DNA polymerase
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
pfre
Propionibacterium freudenreichii subsp. freudenreichii DSM 20271
Pathway
pfre03030
DNA replication
pfre03410
Base excision repair
pfre03420
Nucleotide excision repair
pfre03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pfre00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RM25_1455
03410 Base excision repair
RM25_1455
03420 Nucleotide excision repair
RM25_1455
03440 Homologous recombination
RM25_1455
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pfre03032
]
RM25_1455
03400 DNA repair and recombination proteins [BR:
pfre03400
]
RM25_1455
Enzymes [BR:
pfre01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
RM25_1455
DNA replication proteins [BR:
pfre03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
RM25_1455
DNA repair and recombination proteins [BR:
pfre03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
RM25_1455
NER (nucleotide excision repair)
GGR (global genome repair) factors
RM25_1455
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
5_3_exonuc
DNA_polI_exo1
DNA_pol_A_exo1
DNA_pol_lambd_f
HHH_5
HHH
IMS_HHH
RecR_HhH
Motif
Other DBs
NCBI-ProteinID:
AJQ91165
LinkDB
All DBs
Position
complement(1652767..1655445)
Genome browser
AA seq
892 aa
AA seq
DB search
MTETARLLVIDGHSMAFRAFYALPVENFSTSTGQYTNAVYGFTSMLINLLRNEEPTHLGV
AFDVSRRTFRTDIYEDYKGTRAKTPEEFSGQIGLIKQVLDAMGIAHAELEGFEGDDIVAT
WSAQADAKGWENLIVSGDRDSFQLVDDNTTVLYPKKGVSELSRMTPEAVEAKYGVSPTHY
PELAALVGDTSDNLTGVPGVGPKTAAKWLAKYGDLANLLDHADEIKGKVGDSLRAHLDDV
KRNRELNRELTDLKLPVDVEGLARAEINREAVHEVFDVLQFRTLRDRLFSVFPEAGETKG
EEGFELEVTRPEPGRLGDWFAAHRSDDPIGVEATGHWGAGTGDIDTLAFATTSDDAACVD
VPELTPDDEKALAAWLTDPQATKAMHGAKGPLLALWARQLDLAGLDSDTQLAAYLLRPDQ
RSYDLDDLALRHLGRELRVQDSEQVNQETLDFGSERQPAETAMLRARAIAELAGVLDGEL
DDTSQRGLLHSLEMPLERVLARMEQRGVAIDMDVLDQLRSEYDARVQAAEQASFAAIGTQ
INLGSPKQLQAVLFDQLDMPKTKRTKSGYTTDADALEKLYQKTRHPFLEHLLAYRDTIKL
RQIIDTLIKSTSDDGRIHTTYVQTVAGTGRLSSTDPNLQNIPIRTPEGRRIRDAFVPGEG
FEGLMSADYSQIEMRVMAAASGDKTLIHAFASGADFHSMTASHVFDVPVEQVTPAQRSSV
KQMNYGLAYGLSAYGLSSRLNVSVPEARALMDQYFQTFGPVRDYLDSLVEKARKQGYTET
MLGRRRYLPDLNSSNRQRRQMAERMALNAPMQGTAADIIKTAMLQVEQELSASGLRSRML
LQIHDELVLEVAAGERDRVQQIVGDKMKHAIELTVPLDVSFGYGRSWNAAAH
NT seq
2679 nt
NT seq
+upstream
nt +downstream
nt
gtgactgagactgcgcgactgctggtgatcgacggccattcgatggccttccgggcgttc
tatgcgttgcccgtggagaacttctccacctccaccgggcagtacacgaacgccgtctac
ggcttcacgtcgatgctcatcaacctgctgcgcaacgaggaaccgacgcatctgggcgtg
gccttcgacgtctcacgacgcaccttccgcaccgacatctacgaggactacaagggcacc
cgcgcgaagacccccgaggagttctccggccagatcgggctgatcaagcaggtgctggac
gcgatgggcatcgcccacgccgagctcgagggtttcgagggcgacgacatcgtcgccacc
tggtcggcccaggccgacgcgaagggctgggagaacctgatcgtgtcgggggaccgcgac
agcttccagctggtcgacgacaacaccacggtgctctatccgaagaagggcgtctccgag
ttgtcacgcatgacgcccgaggccgtcgaggccaagtacggcgtcagccccacccattat
ccggagctggccgcactggtcggcgacaccagtgacaacctcaccggcgtgcccggggtc
ggccccaagacggccgccaagtggttggcgaagtacggcgacctggcgaacctgctcgac
cacgccgacgagatcaagggcaaggtgggcgacagcctgcgggcgcacctcgacgatgtg
aagcgcaaccgcgagctcaaccgggaactgaccgacctcaagctgcccgtcgacgtcgag
ggcctggcgcgggccgagatcaatcgcgaggccgtccacgaggtcttcgacgtcctgcag
ttccgcaccctgcgcgaccgcctgttcagcgtcttccccgaggcgggggagaccaagggt
gaggagggcttcgagctcgaggtcacccgtccggagccgggcaggctcggtgattggttc
gcggcccatcgcagcgacgacccgatcggcgtggaggccaccgggcactggggcgccgga
accggggacatcgacacgctggccttcgcgacgaccagcgatgacgccgcatgcgtcgac
gtgcccgaactgacccccgacgacgagaaggccctggcggcgtggctcaccgacccgcag
gcgaccaaggccatgcacggcgccaagggtccactgttggccctgtgggcacgccagctc
gaccttgcgggactggacagcgacacccaattggccgcctacctgctgcgtcccgaccag
cgcagctacgacctggacgaccttgccctgcgccatctgggacgcgagctgcgggtccag
gattccgagcaggtgaaccaggagaccctcgacttcgggtccgaacgccaacccgccgag
accgccatgttgcgggcacgcgccatcgcggagctggccggggtgctcgacggcgagctc
gacgacaccagccagcgcggcctgctgcacagcctcgagatgccgctggaacgtgtgctg
gcgcgcatggagcagcggggcgtggccatcgacatggacgtgctcgaccagctgcgcagc
gaatatgacgcgcgcgtgcaggccgctgagcaggcatcgttcgcggccattggcacccag
atcaacctcggctcgcccaagcagctgcaggcggtgctgttcgaccagctcgacatgccg
aagaccaagcgcaccaagtcgggttacaccaccgacgccgacgccctggagaagctgtac
cagaagaccaggcatcccttcctcgagcacctgctggcctatcgcgacaccatcaagttg
cgccagatcatcgacaccctcatcaagtcgaccagcgatgacgggcgcatccacaccacc
tatgtgcagaccgtggcgggcaccggccgcctgtcgagcaccgaccccaacctgcagaac
atccccatccgcacccccgagggacgccgcatccgcgatgccttcgtgcccggcgagggc
ttcgagggcctgatgagcgccgactactcccaaatcgagatgcgggtgatggcggcggcc
tccggcgacaagacgctgatccatgccttcgcatcgggtgccgacttccactcgatgact
gcctcgcatgtcttcgacgtgcccgtcgagcaggtgacgccggcccagcgctccagcgtg
aagcagatgaactacgggctcgcctacggcctgtcggcctacgggctgtccagccggttg
aacgtctcggtgcccgaggcgcgggcattgatggaccagtacttccagaccttcgggccc
gtgcgcgactatctcgacagcctcgtggagaaggcccgcaagcagggctacaccgagacc
atgctgggcaggcgtcgctatctgcccgacctgaactcgtcgaaccgccaacgtcgccag
atggcggagcgcatggccctcaacgccccgatgcagggcaccgcggctgacatcatcaag
accgccatgctccaggtcgagcaggaactgtcggcctcgggcctcaggagccgcatgctg
ctgcagatccatgacgagctggtgctcgaggtggcggcgggggagcgcgaccgcgtgcaa
cagatcgtcggcgacaagatgaagcatgcgatcgagttgacggtgcccctcgacgtgtcc
ttcggctatggccgcagctggaacgccgcagcccactga
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