Propionibacterium freudenreichii subsp. freudenreichii DSM 20271: RM25_2257
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Entry
RM25_2257 CDS
T03860
Name
(GenBank) Protein RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
pfre
Propionibacterium freudenreichii subsp. freudenreichii DSM 20271
Brite
KEGG Orthology (KO) [BR:
pfre00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pfre03016
]
RM25_2257
Enzymes [BR:
pfre01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
RM25_2257
Transfer RNA biogenesis [BR:
pfre03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
RM25_2257
Prokaryotic type
tRNA splicing ligases
RM25_2257
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AJQ91961
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Position
2530904..2532112
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AA seq
402 aa
AA seq
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MTELPVPVPGTTSDTLMWADPTTVEPEALDQLRAISRLPWLAKLRVMPDVHLGKGATVGS
VIAMRDAVSPAAVGVDIGCGMVAARTNLTVDDLPDSLHAIRSRLEELVPVGWKSHTGTAP
VLSRDEQLKGRFTTLFDRFGQLRAPHIDDRETRALSQSGTLGGGNHFLELQADDTGTVWL
MLHSGSRNIGKELADRHITEAKGLDHNLDLPDRDLAVFLAGTPEMDDYLHDLYWAQEYAR
LNRDIMMRTFKGVITEFFPHATFDHDVNCHHNYVSQECYDGVDLIVTRKGAIFAGSGTLG
LIPGSMATGSYVVRGLGNATGLCSASHGAGRRMSRRAARRTFTVDDLAAQTAGVESRKDE
GVLDEIPGAYKDIDAVIHDQTTGPSPLVEVVARLRTLLCVKG
NT seq
1209 nt
NT seq
+upstream
nt +downstream
nt
atgaccgaactacccgtgcccgtgccgggcaccaccagcgacaccctcatgtgggccgat
cccaccaccgtggagccggaggccctcgaccagctgcgcgcgatctcgcgcctgccctgg
ctggcgaagctgcgcgtgatgcccgacgtgcacctgggcaagggcgccaccgtcggcagc
gtgatcgccatgcgcgacgcggtctcgccggcggcggtgggcgtcgacatcggctgcggc
atggttgccgcacgcaccaacctgacggtggacgacctgcccgacagcctgcatgcgatc
cgctcccgcctcgaggagctcgtgccggtgggatggaagagccacaccggcactgccccg
gtgctgagccgcgacgaacagctcaaggggcgattcaccaccctgttcgaccgcttcgga
cagctgcgcgcgccccacatcgacgaccgcgagacccgggcgctgtcgcagtcgggcacg
ctgggcggcggcaaccacttcctggagctgcaggccgacgacaccggcaccgtatggctc
atgctgcactcgggatcgcgcaacatcggcaaggaactggccgaccgccacatcaccgag
gccaaggggctcgaccacaacctcgacctgcccgaccgcgacctggccgtcttcctggcc
ggcacccccgaaatggacgactacctccacgacctctactgggcgcaggaatatgcgcgc
ctgaaccgcgacatcatgatgcgcaccttcaagggcgtcatcaccgagttcttcccgcac
gccaccttcgaccacgacgtcaactgccaccacaactacgtgtcgcaggagtgctacgac
ggcgtcgacctgatcgtcacgcgcaagggcgccatcttcgccggcagcggcacgctgggg
ctgatccccggctcgatggccaccggctcctatgtggtgcggggcctgggcaacgccacc
ggcctgtgctccgcctcgcatggtgcgggacgacgcatgtcgcgccgtgcggcccgtcgc
accttcaccgtggacgacctcgccgcgcaaacggccggcgtcgagtcgcgcaaggacgag
ggcgtgctcgacgagatccccggcgcctacaaggacatcgacgcggtgatccacgaccag
accaccgggccgagcccgctcgtggaggtggtggcgaggctgcgcacgctgctgtgtgtc
aagggctga
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