Peribacillus frigoritolerans: L8956_00330
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Entry
L8956_00330 CDS
T08180
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pfri
Peribacillus frigoritolerans
Pathway
pfri03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pfri00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
L8956_00330 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pfri03400
]
L8956_00330 (mfd)
Enzymes [BR:
pfri01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
L8956_00330 (mfd)
DNA repair and recombination proteins [BR:
pfri03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
L8956_00330 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
Cas3-like_C_2
RecG_dom3_C
IstB_IS21
Motif
Other DBs
NCBI-ProteinID:
ULM97296
LinkDB
All DBs
Position
61966..65502
Genome browser
AA seq
1178 aa
AA seq
DB search
MNGLQNLFSKQDDVHSLIAGIDEGLKEQIVSGLTGSSRSLLLASVYEKTNRPILLVTHNL
LQAQKFHEDLSSFIPEEELYIYPANELIAADLSVASPELRAQRVEALNFWAEGKKGIVIA
PIPGVRRVLPPKDIWKRHQLAFNLGEDIELEPTLNKFIAMGYNRSEMVASPGEFSIRGGI
IDIYPITEPNPIRIELFDTEIDSIRTFSSEDQRSIEKLKKVTIGPVSEALLETEHIERII
TKLESGLSKSLKKLKDEKTKEQLVQTISYELEQLKMGDIPDKIFKYLSLAYEDPASLIDY
LPVNGLVFLDEISRIQEINDSLEKEEAGWYTDLLSQGQIIHDIKLAHPMQELIMKSSRPF
VYLSLFLRHVPHTNPQNILNFASKQMQNFHGQMNVFKAELERWKKGKYTVVILGQDEERV
KKLHSVLADYDIEAAELFNADSILPGKVQILRGSLNSGFELPMQKFSIITETELFNKKSK
KSVRRQKLSNAERIKSYSELKIGDYVVHVNHGIGKYLGIETLTINGVHKDYLNIRYQADD
KLYVPVDQIDLVQKYVGSEGKEPKLYKLGGTEWKRVKSKVQSSVENIADDLIKLYAEREA
AKGYAFSPDGDMQREFETSFAYNETEDQLRSIVEIKKDMERERPMDRLLCGDVGYGKTEV
AIRAAFKAIMDGKQVAFLVPTTILAQQHYETLRERFQDYPISIGHMSRFRTKKQQTETIK
GLKAGTVDIVVGTHRILSKDIVYRDLGLLIIDEEQRFGVTHKEKIKRLKTNVDVLTLTAT
PIPRTLHMSMLGVRDLSVIETPPENRFPIQTYVMEYNGSLVTEAIERELARGGQVYFLYN
RVEDIARKAEEISMLVPDARVTYAHGQMTEQELEAVMFGFLEGEYDVLVSTTIIETGVDI
PNVNTLIVNEADRMGLSQLYQLRGRVGRSNRVAYAFFTYRKDKVLTEVAEKRLQSIKEFT
ELGSGFKIAMRDLSIRGAGNILGAQQHGFIDSVGFDLYSQMLKEAVDAKRNDQPAEEKNT
LEIDVEVDAYIPDAYIMDGHQKIEMYKRFRGVASLEEVEELQDEMIDRFGEYPEEVSYLF
MIAEMKVYAEKAGIESIKQLKQEISILLREKVSSDVDGQKVFELGSKYGRMVGFGMDGNR
MKLVLHIKGVEQSKWLNILFEMAKGLQYVKKETQATKN
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
atgaatggattgcagaacttgttctccaaacaagatgatgttcattcgttaatagccggc
atcgatgaagggcttaaggagcaaatcgtctctggtctcacaggttcctcgagatcgcta
ttgctggcttccgtatatgaaaagacgaataggcctattttattggttacccataattta
ttgcaagcacaaaaattccatgaggacttatcaagtttcattcctgaggaagaattatat
atatatccagccaatgaattgattgcggctgatttgagtgttgcaagcccggaattaagg
gcccaacgtgttgaggcattgaatttttgggcagagggaaagaaagggattgtcattgcc
ccgattcctggggtgcgtcgtgtgcttcctccaaaggatatttggaagaggcatcagcta
gcgtttaatctaggggaagacatcgagcttgaaccaacgcttaataaattcattgccatg
ggttataaccggtctgaaatggttgcttctccaggtgaattcagtatcaggggcggtatc
atcgatatttacccgatcaccgaacctaatccaatacgaattgaattattcgataccgaa
atagattcaataaggactttttcaagtgaagatcagcgatccatcgaaaaactcaagaaa
gtgacgatcggtcccgtcagtgaggctttgctagagacggagcatatcgaaagaatcata
actaagctcgagagcggattaagtaaaagcttgaagaaacttaaggacgagaaaaccaag
gaacagctggtccaaacgatcagttatgaacttgaacagctgaaaatgggggatataccc
gacaaaatctttaaatacttaagtttagcgtatgaagatccagctagtttaatagattat
ttaccggtaaatggtttggttttcttagatgaaatcagtagaatccaggaaatcaatgat
tctttggaaaaggaagaggctggttggtacacggaccttttaagtcagggacaaattatc
catgacattaaattggctcatcccatgcaggaattaataatgaaatccagcaggccgttt
gtatacctttcattgtttttacggcatgtaccgcatacgaatcctcagaatatcctgaat
tttgccagtaaacaaatgcaaaatttccatggacagatgaatgtgttcaaagctgaactg
gaacgttggaaaaaagggaaatatacagtcgtcatacttggacaggatgaagaacgggta
aaaaagctgcattcggttttagccgactatgatatagaggcagcagaactgtttaatgct
gacagcatccttccaggtaaagtacagattttacgcggcagtctgaacagcggctttgaa
ttgcctatgcaaaaattcagtatcatcacggaaacggaattgtttaataagaagtcaaag
aaatcggtacggagacagaaactatcgaatgcagaacgaatcaagagttattccgaactg
aagatcggtgactatgtcgttcatgttaaccacggtatcggtaaatacttaggtattgaa
acccttacaataaatggggtccataaagattacctgaatattcgttatcaagcggatgac
aaattgtatgttcctgtcgaccaaattgatcttgtccaaaaatatgtcggttctgaagga
aaagagccgaagctttataagctaggcggtacggaatggaaacgtgtcaaaagcaaggtt
caatcatccgttgagaacattgccgatgatttaatcaagttatacgcagaaagagaagcg
gcaaagggctatgccttttcacctgatggtgatatgcagagggaattcgaaacatcattc
gcttataacgaaacggaagatcaattacgttccatagtcgaaatcaaaaaggatatggaa
cgggaacggccgatggatcgtttattatgcggcgatgttggttatgggaagacagaggtg
gcgatccgggccgcttttaaagccataatggatgggaagcaggttgcgtttctagttccg
accacaatccttgcccagcagcattatgaaacattaagggagcgttttcaggattatccg
atttcgattggccatatgagccgcttccggactaaaaagcagcaaacggagacgataaaa
ggattgaaggccggcacggtggatatagtggttggcacgcataggattttatccaaagat
atcgtgtaccgcgatttgggattgcttatcattgatgaagaacagcgctttggcgttaca
cataaggaaaagatcaaacggttaaaaactaatgtggatgtactgactttgactgcgaca
ccgattccgaggacccttcatatgtcgatgttgggcgtgagggatctgtccgtcatcgaa
actccgcctgagaaccggtttccgatccaaacttatgtcatggagtataatggctcattg
gtaacggaagcgatagaacgggaattggccaggggcggtcaggtttatttcctttacaat
cgggtagaggatatagcaagaaaagcagaagaaatttccatgcttgtgcccgatgcccgt
gttacctatgctcatgggcaaatgacagagcaagaactggaagccgtcatgttcggcttt
ttggaaggcgaatatgatgttttggtaagtacaaccattatagaaacgggtgttgatatc
ccgaatgtaaatacgcttatcgtgaatgaagcggatagaatgggactttcacagctctat
cagctgcgtggccgtgtaggtcgatccaatcgggtggcatatgcattcttcacttatagg
aaagataaagtgttgactgaagtggcagaaaagcgtcttcaatccattaaggaatttaca
gaattgggttcagggttcaaaatcgcgatgcgtgatttatccatcaggggagctggaaac
attctaggggctcaacaacatggcttcatcgattcggttggttttgatctgtattcacaa
atgctgaaagaagcggtggatgcgaaacgtaatgaccaaccagccgaagagaagaacaca
ctggaaattgacgttgaagtggatgcttatatccctgatgcctacataatggatggacat
cagaaaatagaaatgtataaaaggttcagaggtgtcgcttcacttgaagaagtggaagaa
ttacaggatgaaatgatcgatcgtttcggagagtatccagaagaggtttcctatttattc
atgattgccgaaatgaaggtatatgctgaaaaggccggaattgaaagcattaaacaatta
aagcaggaaatcagcattctccttagggaaaaggtcagcagcgatgtggatggacaaaaa
gtgttcgagctgggatcgaagtatggccgtatggtgggcttcggcatggacggcaatcga
atgaagctggtcctgcacataaaaggcgtggaacaaagcaaatggctcaatatcttattt
gagatggccaaggggttacagtatgtaaaaaaagagacgcaagccactaaaaactag
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