Peribacillus frigoritolerans: L8956_00665
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Entry
L8956_00665 CDS
T08180
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pfri
Peribacillus frigoritolerans
Pathway
pfri03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pfri00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
L8956_00665 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pfri03021
]
L8956_00665 (rpoC)
03400 DNA repair and recombination proteins [BR:
pfri03400
]
L8956_00665 (rpoC)
Enzymes [BR:
pfri01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
L8956_00665 (rpoC)
Transcription machinery [BR:
pfri03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
L8956_00665 (rpoC)
DNA repair and recombination proteins [BR:
pfri03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
L8956_00665 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_3
RNA_pol_Rpb1_2
RNA_pol_Rpb1_4
Iso_dh
Motif
Other DBs
NCBI-ProteinID:
ULM97339
LinkDB
All DBs
Position
125969..129565
Genome browser
AA seq
1198 aa
AA seq
DB search
MLDVNNFEYMKIGLASPDKIRSWSHGEVKKPETINYRTLKPEKDGLFCERIFGPQKDWEC
HCGKYKRVRYKGVVCDRCGVEVTRAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLVLDM
SPRALEEVIYFASYVVTETGDTTLEKKQLLSEKEYRTYREKYGKKFQAAMGAEAIKKLLQ
DIDTEKEVESLKEELKTAQGQRRTRAIKRLEVLEAFRNSGNEPSWMILDVLPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPSIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPNLKMYQCGLPKE
MAIELFKPFVMKELVQRGLAHNIKSAKRKIERLSPEIWDVLEEVIREHPVLLNRAPTLHR
LGIQAFEPTLVEGRAIRLHPLVCTAYNADFDGDQMAVHVPLSSEAQAEARMLMLAAQNIL
NPKDGKPVVTPSQDMVLGNYYLTLEREGAIGEGMIFKDTSEALLAYQNGYVHLHSRCAVH
ASSLNNETFTEEQNGQLLITTVGKLIFNEILPKSFPYINEPTRYNLETKTPEKYFVEKGA
NIPELIEAQPAIDPFKKKILGNIIAEVFKRFKITETSKMLDRMKDLGFKYSTKAGITVGV
ADIVVLKEKQGIITEAQTKVDNVLKQFRRGLITEDERYDRVISIWSAAKDTIQSKLMDSL
DRRNPIFMMSDSGARGNASNFTQLAGMRGLMANPAGRIIELPIKSSFREGLTVLEYFIST
HGARKGLADTALKTADSGYLTRRLVDVAQDVIIRDDDCGTDRGLKISALREGTEIIEHLE
ERLIGRYARKAIRHPETNDVIVAENDLITEDLANYIESLGIETAWIRSAFTCNTSHGVCK
KCYGRNLATGQEVEVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQEIF
EARNPKGQAVISEIEGTIVSINEIRDKQQEIVVQGAVESRTYTAPYTARLRVTVDTPVRR
GEELTEGSIDPKELLKVTDVLTVQEYLLHEVQKVYRMQGVEIGDKHIEVMVRQMMRKVRV
LDAGETEVLPGTLLDVNQFTTANTDALLTNKLPATGRPVLLGITKASLETDSFLSAASFQ
ETTRVLTDAAIKGKRDELLGLKENVIIGKLVPAGTGMLRYRKANPVVVDESADTVTVD
NT seq
3597 nt
NT seq
+upstream
nt +downstream
nt
ttgttagacgttaataattttgagtatatgaaaattggtcttgcttcaccagacaagatt
cgttcttggtcccatggagaagttaaaaaaccagaaacaatcaactatcgtacgttaaag
ccagaaaaagacggtttattctgtgagagaatttttggacctcaaaaggactgggaatgt
cattgcggaaaatataaacgtgttcgttataaaggcgtagtctgtgaccgttgtggcgtt
gaagtcactcgtgctaaggtgcgtcgtgagcgtatgggtcatattgagctggctgctcca
gtttcacacatatggtattttaaaggaattcctagccgtatgggacttgtgcttgatatg
tctccacgggctttggaagaagttatttactttgcatcttacgtagtaactgaaacgggc
gatacaactttagaaaagaaacagcttctttctgaaaaagaatatcgtacataccgtgaa
aaatacggtaagaagttccaagctgccatgggtgcggaagctattaaaaaacttttacaa
gatattgatacggaaaaggaagtagagtcgttgaaagaggagcttaaaacagctcaaggt
caacgcagaacccgtgcaatcaaacgcttggaagtgcttgaagcattccgtaactccgga
aatgagccttcatggatgatccttgacgtgcttccggtcattccaccggaacttcgtcct
atggttcaacttgatggaggtcgttttgccacatctgatctaaatgatttatatcgccgt
gttatcaaccgtaataatcgattgaaaagattactggatcttggagcaccaagcattatc
gttcaaaatgagaagcgtatgctgcaagaagccgtcgatgctcttatcgataatggccgt
cgcggccgtccggtaactggacctggtaaccgtccgttaaaatcattatctcacatgtta
aaaggtaaacaaggccgtttccgtcaaaaccttcttggtaaacgtgttgattattctggc
cgttccgttatcgtagtcggaccaaacttaaagatgtaccaatgtggtcttccgaaagaa
atggcgattgaattattcaaaccattcgttatgaaggagcttgttcaaagaggtttagcg
cataacatcaaatccgctaagcgtaaaattgaacgtttatctcctgaaatatgggatgta
ctagaagaagttattagagaacacccagtactattgaaccgtgcaccgacacttcataga
cttggtatccaagcatttgaaccaacgttggttgaaggtcgcgcaattcggttgcatccg
ctcgtatgtacagcttacaacgctgactttgacggtgaccaaatggcggtccacgttcct
ctatcttctgaagcccaagccgaagcacgcatgcttatgcttgcagcacagaacattttg
aaccctaaagatggtaaacctgtcgttacaccttctcaagatatggtattaggtaactat
tacttaacattggaaagagaaggcgctatcggtgaaggtatgatctttaaagatacaagt
gaagcattacttgcataccaaaacggatatgtacacttgcattcccgttgtgccgtacat
gcatcgtcactaaataatgaaacattcactgaagaacaaaacggccaacttctaattacc
actgtcggaaaattgatcttcaatgaaattttaccaaaatcattcccgtatattaacgaa
ccgacacgatataatttggaaacgaaaactccagagaaatattttgtggaaaaaggcgct
aatatccctgaattgattgaggctcaacctgctattgatcctttcaagaaaaaaattctt
ggaaatatcattgcggaagtctttaaacgctttaaaattaccgaaacatccaaaatgctt
gaccggatgaaagatcttggattcaaatattcgacaaaagctggtattaccgttggtgtg
gctgatattgtcgttttaaaagaaaaacaaggaatcattactgaggctcaaaccaaagtg
gataatgtcttgaaacaattcagacgtggtcttattactgaggatgagcgttatgatcgc
gtcatttcaatttggagtgctgccaaggataccattcagtccaaacttatggactcactg
gaccgacgcaacccaatcttcatgatgagtgactccggtgcccgtggtaatgcttccaac
tttacgcagcttgcgggtatgcgtggtttgatggccaacccggctggacgtatcattgaa
ttaccgatcaaatcaagtttccgtgaaggtttaaccgtgttggagtacttcatctctaca
catggtgcgcgtaaaggtcttgccgatacagcacttaaaacagccgattccggttacctt
actcgtcgacttgttgacgttgcccaagatgttatcatccgtgatgacgattgtggaacc
gaccgcggcttgaaaatttcagccttgagagaaggtactgaaataattgagcatcttgaa
gagcgcctaattggccgttatgcaagaaaagcgattagacacccagaaacaaatgatgta
atcgtggctgaaaatgatcttattactgaagatcttgcgaactatattgaatcacttgga
attgaaacagcatggatccgttctgcctttacatgtaacaccagccatggtgtatgtaaa
aaatgttatggacgcaacttggctacaggtcaagaagttgaagtgggcgaagcagtcggt
attattgccgctcaatcaatcggagaacctggtacacagttaacgatgcgtacattccac
acaggtggggttgctggggatgatatcactcaaggtcttcctcgtatccaagaaatattt
gaagcgagaaatcctaaaggtcaagctgtcatttccgaaatcgaaggaacgattgtttcg
attaatgaaattcgggataaacaacaggaaatcgttgttcaaggtgcagttgaatcacgc
acatatactgcgccatacactgcccgtttaagagtaactgttgatactcctgtccgtcgt
ggtgaagagttgacagagggttccatcgatccgaaagaattgctgaaggttacagacgtg
cttactgttcaggaatacctgcttcatgaagttcaaaaggtataccggatgcaaggtgtt
gaaatcggtgataagcacatcgaggtaatggttagacaaatgatgcgtaaagtccgtgtg
cttgatgcaggtgaaactgaagtgcttccaggaacattattggatgtcaaccagttcact
actgcaaacactgacgcattgctgaccaacaaattaccggctacaggccgtcctgtattg
ctaggtatcacaaaagcatctcttgaaacggattccttcttgtccgccgcgtcattccaa
gaaacaactagggtcttgactgatgcagcaataaaaggaaaacgtgatgaattgcttggg
cttaaagaaaatgtcatcatcggtaaacttgtccctgcaggaacgggaatgctaagatac
agaaaagcaaaccctgtcgttgttgacgaaagtgccgatacagtaacagtggattaa
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